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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttaagtacataggctggctatgacaattgacaaacaagttttcctacaaataatcaaaggaactgatcattgacttacaacagGTTGGGTTGCTGAATGTGGACGGTTACTATGATCCGTTGCTTGCGCTATTTGATAAGGGTGCGGCAGAAGGATTTATTAAGGCCGATTGCAGACAAATAA

Basic information

species Oryza sativa
transcript LOC_Os01g51210.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88849870|gb|CI001576.1|CI001576
EST:     AGTTGTTAGAGATGATAACTTGGTCACAACTTGGAATTCATGACAAACCA                         GTTGGGTTGCTGAATGTGGACGGTTACTATGATCCGTTGCTTGCGCTATTT
genomic: AGTTGTTAGAGATGATAACTTGGTCACAACTTGGAATTCATGACAAACCAgtgagtttaa ... cttacaacagGTTGGGTTGCTGAATGTGGACGGTTACTATGATCCGTTGCTTGCGCTATTT
EST: gi|9865848|gb|AU101598.1|AU101598
EST:     AGTTGTTAGAGATGATAACTTGGTCACAACTTGGAATTCATGACAAACCA                         GTTGGGTTGCTGAATGTGGACGGTTACTATGATCCGTTGCTTGCGCTATTT
genomic: AGTTGTTAGAGATGATAACTTGGTCACAACTTGGAATTCATGACAAACCAgtgagtttaa ... cttacaacagGTTGGGTTGCTGAATGTGGACGGTTACTATGATCCGTTGCTTGCGCTATTT
EST: gi|86543341|gb|CI183547.1|CI183547
EST:     TAACTTGGTCACAACTTGGAATTCATGACAAACCA                         GTTGGGTTGCTGAATGTGGACGGTTACTATGATCCGTTGCTTGCGCTATTT
genomic: TAACTTGGTCACAACTTGGAATTCATGACAAACCAgtgagtttaa ... cttacaacagGTTGGGTTGCTGAATGTGGACGGTTACTATGATCCGTTGCTTGCGCTATTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacaaacaagttttcctacaaataatcaaaggaactgatcattgacttacaacagGTTGGGTTGCTGAATGTGGACGGTTACTATGATCCGTTGCTTGCGCTATTTGATAAGGGTGCGGCAGAAGGATTTATTAAGGCCGATTGCAGACAAATAA
                                           gacttac  putative branch site (score: 2)
                tacaaataatcaaa  TA-rich tract