1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ataattatgtccttctcatgcctttagttcttgctattagaatctttagaatttgcgttcgaatactgatttttcttggggcctttttttttttgttcagATTTGGCAAGGTGCTGAACGGTGAAATTGCATTATGCCGCCAGATTGCGCAGCAAACTGGTATCCTGTTGGATCCAATGTACACCTTAGCTGGTTGGGAG
species | Oryza sativa |
transcript | LOC_Os01g50060.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GATATTGGTGACAGTTTAGTTGAATGGGTGGAACGATTTTCACCAAGACG ATTTGGCAAGGTGCTGAACGGTGAAATTGCATTATGCCGCCAGATTGCGCAEST: gi|11442719|gb|BF430622.1|BF430622
genomic: GATATTGGTGACAGTTTAGTTGAATGGGTGGAACGATTTTCACCAAGACGgtatgcttca ... ttttgttcagATTTGGCAAGGTGCTGAACGGTGAAATTGCATTATGCCGCCAGATTGCGCA
EST: GATATTGGTGACAGTTTAGTTGAATGGGTGGAACGATTTTCACCAAGACG ATTTGGCAAGGTGCTGAACGGTGAAATTGCATTATGCCGCCAGATTGCGCA
genomic: GATATTGGTGACAGTTTAGTTGAATGGGTGGAACGATTTTCACCAAGACGgtatgcttca ... ttttgttcagATTTGGCAAGGTGCTGAACGGTGAAATTGCATTATGCCGCCAGATTGCGCA
ttagaatttgcgttcgaatactgatttttcttggggcctttttttttttgttcagATTTGGCAAGGTGCTGAACGGTGAAATTGCATTATGCCGCCAGATTGCGCAGCAAACTGGTATCCTGTTGGATCCAATGTACACCTTAGCTGGTTGGGAG
tactgat putative branch site (score: 2)
cctttttttttttgtt putative PPT
tttttttttttgttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataattatgtccttctcatgcctttagttcttgctattagaatctttagaatttgcgttcgaatactgatttttcttggggcctttttttttttgttcagATTTGGCAAGGTGCTGAACGGTGAAATTGCATTATGCCGCCAGATTGCGCAGCAAACTGGTATCCTGTTGGATCCAATGTACACCTTAGCTGGTTGGGAG
- - - - - - - - catgcct
- - - - - - - - - - - - - -ttcttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgcgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttcttg