1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttgtcagaatctgaacatatgtagatgtgttgatgcgcaacatatcctaaactttatactcttttttatatgttatcaatatgtaacaatttttccacagGACTTGGGTTATCCATCCTCTGCAAAAACTGAACAGTTAGTGACTTCATCAGTTAAAGGAGTATCAAGCGGCAGTAAAGGAAATGAAGCAGTCAACACGA
species | Oryza sativa |
transcript | LOC_Os01g49310.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GATTTGCTTCAGCATCAATGCAAAAG GACTTGGGTTATCCATTCTCTGCAAAAACTGAACAGTTAGTGACTTCATCAEST: gi|218487953|gb|FG943628.1|FG943628
genomic: GATTTGCTTCAGCATCAATGCAAAAGgtattagcac ... ttttccacagGACTTGGGTTATCCATCCTCTGCAAAAACTGAACAGTTAGTGACTTCATCA
EST: GATTTGCTTCAGGGATCAATGCAAAAG GACTTGGGTTATCCATTCTCTGCAAAAACTGAACAGTTAGTGACTTCATCAEST: gi|86891181|gb|CI305955.1|CI305955
genomic: GATTTGCTTCA-GCATCAATGCAAAAGgtattagcac ... ttttccacagGACTTGGGTTATCCATCCTCTGCAAAAACTGAACAGTTAGTGACTTCATCA
EST: GATTTGCTTCAGCATCAATGCAAAAG GACTTGGGTTATCCATCCTCTGCAAAAACTGAACAGTTAGTGACTTCATCA
genomic: GATTTGCTTCAGCATCAATGCAAAAGgtattagcac ... ttttccacagGACTTGGGTTATCCATCCTCTGCAAAAACTGAACAGTTAGTGACTTCATCA
cctaaactttatactcttttttatatgttatcaatatgtaacaatttttccacagGACTTGGGTTATCCATCCTCTGCAAAAACTGAACAGTTAGTGACTTCATCAGTTAAAGGAGTATCAAGCGGCAGTAAAGGAAATGAAGCAGTCAACACGA
tttttccac CT-rich tract
tcttttttatatgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtcagaatctgaacatatgtagatgtgttgatgcgcaacatatcctaaactttatactcttttttatatgttatcaatatgtaacaatttttccacagGACTTGGGTTATCCATCCTCTGCAAAAACTGAACAGTTAGTGACTTCATCAGTTAAAGGAGTATCAAGCGGCAGTAAAGGAAATGAAGCAGTCAACACGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - -catatgt
- - - - - - - - atatgta
- - - - - - - - - - - - - - gttgatg
- - - - - - - - - - - - - - - - - - -caacata