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...gcgacataatctctaatagttaagctaattgcaatttggaggagtcttgagaaaattatggtccatgaatatctcataggtctgcctctaattgttacagGCCAACCACGGAGGCACCTTTTAACCACTGGATGGAGCGGGTTTATCAACAAGAAGAAGCTAGTATCTGGGGATGCAGTGCTATTCCTCAG
species | Oryza sativa |
transcript | LOC_Os01g48060.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGCAAAGGATCTGCACGGCACGGAATGGAGGTTCAGACATATCTATCGAG GCCAACCACGGAGGCACCTTTTAACCACTGGATGGAGCGGGTTEST: gi|29678647|gb|CB674922.1|CB674922
genomic: GGCAAAGGATCTGCACGGCACGGAATGGAGGTTCAGACATATCTATCGAGgtgattcgcc ... attgttacagGCCAACCACGGAGGCACCTTTTAACCACTGGATGGAGCGGGTT
EST: GGCAAAGGATCTGCACGGCACGGAATGGAGGTTCAGACATATCTATCGAG GCCAACCACGGAGGCACCTTTTAACCACTGGATGGAGCGGGTTTATCCACAEST: gi|33677338|gb|CF305577.1|CF305577
genomic: GGCAAAGGATCTGCACGGCACGGAATGGAGGTTCAGACATATCTATCGAGgtgattcgcc ... attgttacagGCCAACCACGGAGGCACCTTTTAACCACTGGATGGAGCGGGTTTATCAACA
EST: ACGGAATGGAGGTTCAGACATATCTATCGAG GCCAACCACGGAGGCACCTTTTAACCACTGGATGGAGCGGGTTTATCAACAEST: gi|58665936|gb|CK054622.1|CK054622
genomic: ACGGAATGGAGGTTCAGACATATCTATCGAGgtgattcgcc ... attgttacagGCCAACCACGGAGGCACCTTTTAACCACTGGATGGAGCGGGTTTATCAACA
EST: GGCAAAGGATCTGCACGGCACGGAATGGAGGTTCAGACATATCTATCGAG GCCAACCACGGAGGCACCTTTTAACCACTGGATGGAGCGGGTTTATCAACA
genomic: GGCAAAGGATCTGCACGGCACGGAATGGAGGTTCAGACATATCTATCGAGgtgattcgcc ... attgttacagGCCAACCACGGAGGCACCTTTTAACCACTGGATGGAGCGGGTTTATCAACA
cttgagaaaattatggtccatgaatatctcataggtctgcctctaattgttacagGCCAACCACGGAGGCACCTTTTAACCACTGGATGGAGCGGGTTTATCAACAAGAAGAAGCTAGTATCTGGGGATGCAGTGCTATTCCTCAG
ctctaat putative branch site (score: 3)
aaaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcgacataatctctaatagttaagctaattgcaatttggaggagtcttgagaaaattatggtccatgaatatctcataggtctgcctctaattgttacagGCCAACCACGGAGGCACCTTTTAACCACTGGATGGAGCGGGTTTATCAACAAGAAGAAGCTAGTATCTGGGGATGCAGTGCTATTCCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC