1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gggagacagtgttagctcatgctgtcactcaggacaggagggctagtcagttgtcattatccacctcaaatctaaccatcattcgttatcttttttgcagGGGGCGCGCGGCCAAATTCGACGGATCCAATGAAGCTCCCATAGACCCTCATGGCCTCATCTGCTCTGCTCATCCTCCAATAATGTGACAACCTTGGAGT
species | Oryza sativa |
transcript | LOC_Os01g47550.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTGTAGATCTCATGATTGTTTCTCTTCAGCCTCCATTCATCCTCAATAAT GGGGCGCGCGGCCAAATTCGACGGATCCAATGAAGCTCCCATAGACCCTCAEST: gi|27554267|gb|CA998167.1|CA998167
genomic: CTGTAGATCTCATGATTGTTTCTCTTCAGCCTCCATTCATCCTCAATAATgtaagttgtc ... ttttttgcagGGGGCGCGCGGCCAAATTCGACGGATCCAATGAAGCTCCCATAGACCCTCA
EST: CTGTAGATCTCATGATTGTTTCTCTTCAGCCTCCATTCATCCTCAATAAT GGGGCGCGCGGCCAAATTCGACGGATCCAATGAAGCTCCCATAGACCCTCAEST: gi|13806717|gb|AU181639.1|AU181639
genomic: CTGTAGATCTCATGATTGTTTCTCTTCAGCCTCCATTCATCCTCAATAATgtaagttgtc ... ttttttgcagGGGGCGCGCGGCCAAATTCGACGGATCCAATGAAGCTCCCATAGACCCTCA
EST: CTGTAGATCTCATGATTGTTTCTCTTCAGCCTCCATTCATCCTCAATAAT GGGGCGCGCGGGCCAAATTCGACGGATCCAATGAAGCTCCCATAGACCCTCEST: gi|13165430|gb|AU174227.1|AU174227
genomic: CTGTAGATCTCATGATTGTTTCTCTTCAGCCTCCATTCATCCTCAATAATgtaagttgtc ... ttttttgcagGGGGCGCGC-GGCCAAATTCGACGGATCCAATGAAGCTCCCATAGACCCTC
EST: CTGTAGATCTCATGATTGTTTCTCTTCAGCCTCCATTCATCCTCAATAAT GGGGCGCGCGGCCAAATTCGACGGATCCAATGAAGCTCCCATAGACCCTCA
genomic: CTGTAGATCTCATGATTGTTTCTCTTCAGCCTCCATTCATCCTCAATAATgtaagttgtc ... ttttttgcagGGGGCGCGCGGCCAAATTCGACGGATCCAATGAAGCTCCCATAGACCCTCA
gtcagttgtcattatccacctcaaatctaaccatcattcgttatcttttttgcagGGGGCGCGCGGCCAAATTCGACGGATCCAATGAAGCTCCCATAGACCCTCATGGCCTCATCTGCTCTGCTCATCCTCCAATAATGTGACAACCTTGGAGT
atctaac putative branch site (score: 6)
ttcgttatctttttt putative PPT
ttatctttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggagacagtgttagctcatgctgtcactcaggacaggagggctagtcagttgtcattatccacctcaaatctaaccatcattcgttatcttttttgcagGGGGCGCGCGGCCAAATTCGACGGATCCAATGAAGCTCCCATAGACCCTCATGGCCTCATCTGCTCTGCTCATCCTCCAATAATGTGACAACCTTGGAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - -tgctgtc