1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tcaatcattcgagcaatttatttccctgtgcattatatactactagtatatgtgaagctaatgctcattgatatatatatctgggaattcgatttgatagGCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAATGTCCACCCGGCCATCCTGAGCACAGCGTAAGCAATTTCCTTTGCTTGTT
species | Oryza sativa |
transcript | LOC_Os01g45550.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAATCGCCATCGGACTCCGCGGGACGCTCCTGCACGTCGCCATTGTTCAG GCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAAT
genomic: CAATCGCCATCGGACTCCGCGGGACGCTCCTGCACGTCGCCATTGTTCAGgtaactatgg ... gatttgatagGCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAAT
gtatatgtgaagctaatgctcattgatatatatatctgggaattcgatttgatagGCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAATGTCCACCCGGCCATCCTGAGCACAGCGTAAGCAATTTCCTTTGCTTGTT
tcattgatatatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaatcattcgagcaatttatttccctgtgcattatatactactagtatatgtgaagctaatgctcattgatatatatatctgggaattcgatttgatagGCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAATGTCCACCCGGCCATCCTGAGCACAGCGTAAGCAATTTCCTTTGCTTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - -gtgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctaatgc