1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tcaatcattcgagcaatttatttccctgtgcattatatactactagtatatgtgaagctaatgctcattgatatatatatctgggaattcgatttgatagGCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAATGTCCACCCGGCCATCCTGAGCACAGC
species | Oryza sativa |
transcript | LOC_Os01g45550.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAATCGCCATCGGACTCCGCGGGACGCTCCTGCACGTCGCCATTGTTCAG GCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAATEST: gi|89179874|gb|CI044153.1|CI044153
genomic: CAATCGCCATCGGACTCCGCGGGACGCTCCTGCACGTCGCCATTGTTCAGgtaactatgg ... gatttgatagGCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAAT
EST: CAATCGCCATCGGACTCCGCGGGACGCTCCTGCACGTCGCCATTGTTCAG GCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAATEST: gi|89194724|gb|CI117161.1|CI117161
genomic: CAATCGCCATCGGACTCCGCGGGACGCTCCTGCACGTCGCCATTGTTCAGgtaactatgg ... gatttgatagGCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAAT
EST: CAATCGCCATCGGACTCCGCGGGACGCTCCTGCACGTCGCCCTTGTTCAG GCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAATEST: gi|89164996|gb|CI102084.1|CI102084
genomic: CAATCGCCATCGGACTCCGCGGGACGCTCCTGCACGTCGCCATTGTTCAGgtaactatgg ... gatttgatagGCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAAT
EST: CAATCGCCATCGGACTCCGCGGGACGCTCCTGCACGTCGCCATTGTTCAG GCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAATEST: gi|88246655|gb|CI246504.1|CI246504
genomic: CAATCGCCATCGGACTCCGCGGGACGCTCCTGCACGTCGCCATTGTTCAGgtaactatgg ... gatttgatagGCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAAT
EST: CAATCGCCATCGGACTCCGCGGGACGCTCCTGCACGTCGCCATTGTTCAG GCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAATEST: gi|58601059|gb|CK011587.1|CK011587
genomic: CAATCGCCATCGGACTCCGCGGGACGCTCCTGCACGTCGCCATTGTTCAGgtaactatgg ... gatttgatagGCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAAT
EST: CAATCGCCATCGGACTCCGCGGGACGCTCCTGCACGTCGCCATTGTTCAG GCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAATEST: gi|86477474|gb|CI120107.1|CI120107
genomic: CAATCGCCATCGGACTCCGCGGGACGCTCCTGCACGTCGCCATTGTTCAGgtaactatgg ... gatttgatagGCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAAT
EST: CAATCGCCATCGGACTCCGCGGGACGCTCCTGCACGTCGCCATTGTTCAG GCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAATEST: gi|86501615|gb|CI144248.1|CI144248
genomic: CAATCGCCATCGGACTCCGCGGGACGCTCCTGCACGTCGCCATTGTTCAGgtaactatgg ... gatttgatagGCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAAT
EST: CAATCGCCATCGGACTCCGCGGGACGCTCCTGCACGTCGCCATTGTTCAG GCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAATEST: gi|86592538|gb|CI253219.1|CI253219
genomic: CAATCGCCATCGGACTCCGCGGGACGCTCCTGCACGTCGCCATTGTTCAGgtaactatgg ... gatttgatagGCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAAT
EST: CAATCGCCATCGGACTCCGCGGGACGCTCCTGCACGTCGCCATTGTTCAG GCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAATEST: gi|86505347|gb|CI147980.1|CI147980
genomic: CAATCGCCATCGGACTCCGCGGGACGCTCCTGCACGTCGCCATTGTTCAGgtaactatgg ... gatttgatagGCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAAT
EST: CAATCGCCATCGGACTCCGCGGGACGCTCCTGCACGTCGCCATTGTTCAG GCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAATEST: gi|86494150|gb|CI136783.1|CI136783
genomic: CAATCGCCATCGGACTCCGCGGGACGCTCCTGCACGTCGCCATTGTTCAGgtaactatgg ... gatttgatagGCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAAT
EST: CAATCGCCATCGGACTCCGCGGGACGCTCCTGCACGTCGCCATTGTTCAG GCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAATEST: gi|86535239|gb|CI175445.1|CI175445
genomic: CAATCGCCATCGGACTCCGCGGGACGCTCCTGCACGTCGCCATTGTTCAGgtaactatgg ... gatttgatagGCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAAT
EST: CAATCGCCATCGGACTCCGCGGGACGCTCCTGCACGTCGCCATTGTTCAG GCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAATEST: gi|109712580|gb|CI105188.1|CI105188
genomic: CAATCGCCATCGGACTCCGCGGGACGCTCCTGCACGTCGCCATTGTTCAGgtaactatgg ... gatttgatagGCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAAT
EST: CGGGACGCTCCTGCACGTCGCCATTGTTCAG GCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAATEST: gi|87015309|gb|CI275499.1|CI275499
genomic: CGGGACGCTCCTGCACGTCGCCATTGTTCAGgtaactatgg ... gatttgatagGCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAAT
EST: CAATCGCCATCGGACTCCGCGGGACGCTCCTGCACGTCGCCATTGTTCAG GCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAATEST: gi|86521327|gb|CI161533.1|CI161533
genomic: CAATCGCCATCGGACTCCGCGGGACGCTCCTGCACGTCGCCATTGTTCAGgtaactatgg ... gatttgatagGCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAAT
EST: CAATCGCCATCGGACTCCGCGGGACGCTCCTGCACGTCGCCATTGTTCAG GCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAATEST: gi|89163486|gb|CI100376.1|CI100376
genomic: CAATCGCCATCGGACTCCGCGGGACGCTCCTGCACGTCGCCATTGTTCAGgtaactatgg ... gatttgatagGCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAAT
EST: CAATCGCCATCGGACTCCGCGGGACGCTCCTGCACGTCGCCATTGTTCAG GCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAATEST: gi|88225519|gb|CI225435.1|CI225435
genomic: CAATCGCCATCGGACTCCGCGGGACGCTCCTGCACGTCGCCATTGTTCAGgtaactatgg ... gatttgatagGCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAAT
EST: CAATCGCCATCGGACTCCGCGGGACGCTCCTGCACGTCGCCATTGTTCAG GCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAATEST: gi|89183756|gb|CI046321.1|CI046321
genomic: CAATCGCCATCGGACTCCGCGGGACGCTCCTGCACGTCGCCATTGTTCAGgtaactatgg ... gatttgatagGCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAAT
EST: CGATCGCCATCGGACTCCGCGGGACGCTCCTGCACGTCGCCATTGTTCAG GCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAATEST: gi|87027442|gb|CI272207.1|CI272207
genomic: CAATCGCCATCGGACTCCGCGGGACGCTCCTGCACGTCGCCATTGTTCAGgtaactatgg ... gatttgatagGCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAAT
EST: CAATCGCCATCGGACTCCGCGGGACGCTCCTGCACGTCGCCATTGTTCAG GCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAATEST: gi|88222283|gb|CI222239.1|CI222239
genomic: CAATCGCCATCGGACTCCGCGGGACGCTCCTGCACGTCGCCATTGTTCAGgtaactatgg ... gatttgatagGCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAAT
EST: CAATCGCCATCGGACTCCGCGGGACGCTCCTGCACGTCGCCATTGTTCAG GCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAATEST: gi|86482461|gb|CI125094.1|CI125094
genomic: CAATCGCCATCGGACTCCGCGGGACGCTCCTGCACGTCGCCATTGTTCAGgtaactatgg ... gatttgatagGCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAAT
EST: CAATCGCCATCGGACTCCGCGGGACGCTCCTGCACGTCGCCATTGTTCAG GCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAATEST: gi|86486031|gb|CI128664.1|CI128664
genomic: CAATCGCCATCGGACTCCGCGGGACGCTCCTGCACGTCGCCATTGTTCAGgtaactatgg ... gatttgatagGCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAAT
EST: CAATCGCCATCGGACTCCGCGGGACGCTCCTGCACGTCGCCATTGTTCAG GCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAATEST: gi|89175799|gb|CI042820.1|CI042820
genomic: CAATCGCCATCGGACTCCGCGGGACGCTCCTGCACGTCGCCATTGTTCAGgtaactatgg ... gatttgatagGCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAAT
EST: CTCCGCGGGACGCTCCTGCACGTCGCCATTGTTCAG GCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAATEST: gi|58675818|gb|CK064505.1|CK064505
genomic: CTCCGCGGGACGCTCCTGCACGTCGCCATTGTTCAGgtaactatgg ... gatttgatagGCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAAT
EST: CAATCGCCATCGGACTCCGCGGGACGCTCCTGCACGTCGCCATTGTTCAG GCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAATEST: gi|88246381|gb|CI246230.1|CI246230
genomic: CAATCGCCATCGGACTCCGCGGGACGCTCCTGCACGTCGCCATTGTTCAGgtaactatgg ... gatttgatagGCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAAT
EST: CAATCGCCATCGGACTCCGCGGGACGCTCCTGCACGTCGCCATTGTTCAG GCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAATEST: gi|87027635|gb|CI274199.1|CI274199
genomic: CAATCGCCATCGGACTCCGCGGGACGCTCCTGCACGTCGCCATTGTTCAGgtaactatgg ... gatttgatagGCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAAT
EST: CAATCGCCATCGGACTCCGCGGGACGCTCCTGCACGTCGCCATTGTTCAG GCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATATAAT
genomic: CAATCGCCATCGGACTCCGCGGGACGCTCCTGCACGTCGCCATTGTTCAGgtaactatgg ... gatttgatagGCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAAT
gtatatgtgaagctaatgctcattgatatatatatctgggaattcgatttgatagGCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAATGTCCACCCGGCCATCCTGAGCACAGC
tcattgatatatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaatcattcgagcaatttatttccctgtgcattatatactactagtatatgtgaagctaatgctcattgatatatatatctgggaattcgatttgatagGCGGCTCTACCACAAGGGATTGTGCCTTTTGTTTTTGCAAAAGAATACAATGTCCACCCGGCCATCCTGAGCACAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA