1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gtctccaactctttttagaagtgtagacaatattgaaccatgtaaatatgataattttttctgtgtagtattagttaatttattctcaacaaaattgcagTATACACCAGCCATTGACATTTGGAGCATTGGATGCATCTTTGCTGAGGTGCTGACAGGAAAGCCTTTATTTCCTGGTAAAAATGTTGTCCATCAATTAG
species | Oryza sativa |
transcript | LOC_Os01g43910.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAACAAGATGGTACAGGGCTCCAGAGCTCTGTGGATCCTTCTTTTCAAAG TATACACCAGCCATTGACATTTGGAGCATTGGATGCATCTTTGCTGAGGTGEST: gi|58673221|gb|CK061907.1|CK061907
genomic: CAACAAGATGGTACAGGGCTCCAGAGCTCTGTGGATCCTTCTTTTCAAAGgtaagttttg ... aaaattgcagTATACACCAGCCATTGACATTTGGAGCATTGGATGCATCTTTGCTGAGGTG
EST: CAACAAGATGGTACAGGGCTCCAGAGCTCTGTGGATCCTTCTTTTCAAAG TATACACCAGCCATTGACATTTGGAGCATTGGATGCATCTTTGCTGAGGTGEST: gi|33678274|gb|CF306513.1|CF306513
genomic: CAACAAGATGGTACAGGGCTCCAGAGCTCTGTGGATCCTTCTTTTCAAAGgtaagttttg ... aaaattgcagTATACACCAGCCATTGACATTTGGAGCATTGGATGCATCTTTGCTGAGGTG
EST: CAACAAGATGGTACAGGGCTCCAGAGCTCTGTGGATCCTTCTTTTCANAG TATACACCAGCCATTGACATTTGGAGCATTGGATGCATCTTTGCTGAGGTGEST: gi|58604024|gb|CK014552.1|CK014552
genomic: CAACAAGATGGTACAGGGCTCCAGAGCTCTGTGGATCCTTCTTTTCAAAGgtaagttttg ... aaaattgcagTATACACCAGCCATTGACATTTGGAGCATTGGATGCATCTTTGCTGAGGTG
EST: CAACAAGATGGTACAGGGCTCCAGAGCTCTGTGGATCCTTCTTTTCAAAG TATACACCAGCCATTGACATTTGGAGCATTGGATGCATCTTTGCTGAGGTGEST: gi|29627445|gb|CB632456.1|CB632456
genomic: CAACAAGATGGTACAGGGCTCCAGAGCTCTGTGGATCCTTCTTTTCAAAGgtaagttttg ... aaaattgcagTATACACCAGCCATTGACATTTGGAGCATTGGATGCATCTTTGCTGAGGTG
EST: CAACAAGATGGTACAGGGCTCCAGAGCTCTGTGGATCCTTCTTTTCAAAG TATACACCAGCCATTGACATTTGGAGCATTGGATGCATCTTTGCTGAGGTG
genomic: CAACAAGATGGTACAGGGCTCCAGAGCTCTGTGGATCCTTCTTTTCAAAGgtaagttttg ... aaaattgcagTATACACCAGCCATTGACATTTGGAGCATTGGATGCATCTTTGCTGAGGTG
atatgataattttttctgtgtagtattagttaatttattctcaacaaaattgcagTATACACCAGCCATTGACATTTGGAGCATTGGATGCATCTTTGCTGAGGTGCTGACAGGAAAGCCTTTATTTCCTGGTAAAAATGTTGTCCATCAATTAG
agttaat putative branch site (score: 27)
ataattttttctgtgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctccaactctttttagaagtgtagacaatattgaaccatgtaaatatgataattttttctgtgtagtattagttaatttattctcaacaaaattgcagTATACACCAGCCATTGACATTTGGAGCATTGGATGCATCTTTGCTGAGGTGCTGACAGGAAAGCCTTTATTTCCTGGTAAAAATGTTGTCCATCAATTAG
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