1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgaattccgcatcgcaggttttactaatgattgattgctcatgcaagtaaactcatcgcaatccatggactccattccagGGAGTTGGGCATTGGAATTGTTCCCTACAGCCCTATCGCCCGCGGGTTTTTCGGAGGGAGAGGAGTGACAGAACAATTGTCTGCTGAATCTAATTTG
species | Oryza sativa |
transcript | LOC_Os01g43090.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGTCTCTCTGGGCTCGTGACATTGAACCCGAAATTGTGCCGCTCTGCAG GGAGTTGGGCATTGGAATTGTTCCCTACAGCCCTATCGCCCGCGGGTTTTTEST: gi|66916219|gb|CX103067.1|CX103067
genomic: TGGTCTCTCTGGGCTCGTGACATTGAACCCGAAATTGTGCCGCTCTGCAGgtgaattccg ... tccattccagGGAGTTGGGCATTGGAATTGTTCCCTACAGCCCTATCGCCCGCGGGTTTTT
EST: AATTGTGCCGCTCTGCAG GGAGTTGGGCATTGGAATTGTTCCCTACAGCCCTATCGCCCGCGGGTTTTTEST: gi|29638513|gb|CB643522.1|CB643522
genomic: AATTGTGCCGCTCTGCAGgtgaattccg ... tccattccagGGAGTTGGGCATTGGAATTGTTCCCTACAGCCCTATCGCCCGCGGGTTTTT
EST: TGGTCTCTCTGGGCTCGTGACATTGAACCCGAAATTGTGCCGCTCTGCAG GGAGTTGGGCATTGGAATTGTTCCCTACAGCCCTATCGCCCGCGGGTTTTTEST: gi|163927699|gb|EG712471.1|EG712471
genomic: TGGTCTCTCTGGGCTCGTGACATTGAACCCGAAATTGTGCCGCTCTGCAGgtgaattccg ... tccattccagGGAGTTGGGCATTGGAATTGTTCCCTACAGCCCTATCGCCCGCGGGTTTTT
EST: TGGTCTCTCTGGGCTCGTGACATTGAACCCGAAATTGTGCCGCTCTGCAG GGAGTTGGGCATTGGAATTGTTCCCTACAGCCCTATCGCCCGCGGGTTTTTEST: gi|29682107|gb|CB678382.1|CB678382
genomic: TGGTCTCTCTGGGCTCGTGACATTGAACCCGAAATTGTGCCGCTCTGCAGgtgaattccg ... tccattccagGGAGTTGGGCATTGGAATTGTTCCCTACAGCCCTATCGCCCGCGGGTTTTT
EST: TGGTCTCTCTGGGCTCGTGACATTGAACCCGAAATTGTGCCGCTCTGCAA GGAGTTGGGCATTGGAATTGTTCCCTACAGCCCTATCACCCGCGGGTTT
genomic: TGGTCTCTCTGGGCTCGTGACATTGAACCCGAAATTGTGCCGCTCTGCAGgtgaattccg ... tccattccagGGAGTTGGGCATTGGAATTGTTCCCTACAGCCCTATCGCCCGCGGGTTT
aatgattgattgctcatgcaagtaaactcatcgcaatccatggactccattccagGGAGTTGGGCATTGGAATTGTTCCCTACAGCCCTATCGCCCGCGGGTTTTTCGGAGGGAGAGGAGTGACAGAACAATTGTCTGCTGAATCTAATTTG
ctccattcc CT-rich tract
aagtaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaattccgcatcgcaggttttactaatgattgattgctcatgcaagtaaactcatcgcaatccatggactccattccagGGAGTTGGGCATTGGAATTGTTCCCTACAGCCCTATCGCCCGCGGGTTTTTCGGAGGGAGAGGAGTGACAGAACAATTGTCTGCTGAATCTAATTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG