1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttattactcctatctgacaagcttcctcaagtaaaaggcgttagcaccctcttctagaaagctagttactgatatctgtgtcaaatcatttttttttcagGAGTAGTGGTGTTCTTTGTAATGGTAGGATTCATTGGACTGATAGTACAGTGTTCGTCTTTCAACACCAATGATCCATGCCTGGCTGGATGCCGCAATTG
species | Oryza sativa |
transcript | LOC_Os01g42500.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTGGGAACACATCCTATCAAATCATCCTGTGCCCTTTTACTACTGTGTCG GAGTAGTGGTGTTCTTTGTAATGGTAGGATTCATTGGACTGATAGTACAGTEST: gi|218504674|gb|FG959566.1|FG959566
genomic: TTGGGAACACATCCTATCAAATCATCCTGTGCCCTTTTACTACTGTGTCGgtatgcaatt ... tttttttcagGAGTAGTGGTGTTCTTTGTAATGGTAGGATTCATTGGACTGATAGTACAGT
EST: TTGGGAACACATCCTATCAAATCATCCTGTGCCCTTTTACTACTGTGTCG GAGTAGTGGTGTTCTTTGTAATGGTAGGATCCATTGGACTGATAGTACAGT
genomic: TTGGGAACACATCCTATCAAATCATCCTGTGCCCTTTTACTACTGTGTCGgtatgcaatt ... tttttttcagGAGTAGTGGTGTTCTTTGTAATGGTAGGATTCATTGGACTGATAGTACAGT
accctcttctagaaagctagttactgatatctgtgtcaaatcatttttttttcagGAGTAGTGGTGTTCTTTGTAATGGTAGGATTCATTGGACTGATAGTACAGTGTTCGTCTTTCAACACCAATGATCCATGCCTGGCTGGATGCCGCAATTG
tactgat putative branch site (score: 23)
tcatttttttttc putative PPT
tcaaatcatttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttattactcctatctgacaagcttcctcaagtaaaaggcgttagcaccctcttctagaaagctagttactgatatctgtgtcaaatcatttttttttcagGAGTAGTGGTGTTCTTTGTAATGGTAGGATTCATTGGACTGATAGTACAGTGTTCGTCTTTCAACACCAATGATCCATGCCTGGCTGGATGCCGCAATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - -agtaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttactga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgtgtc