1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gttgactgttatctataatcattgattgatgttgtttctatagattcctcacctcaccaatatgttcattttgtggttaatattatcataacacgtgaactttggtttcagCAAAGATATGGAGAGAATGCTGGACAACTACTTGATTCAAACGAAGCGTTGTTGAAAGCATCTGCAAGTGGACAATCTTCAGG
species | Oryza sativa |
transcript | LOC_Os01g42260.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGTTAAAGTTGCCTTCCCAGAGAGATGGTTTGGACGAGGTGTCAATTAAG CAAAGATATGGAGAGAATGCTGGACAACTACTTGATTCAAACGAAGCGTTGEST: gi|58676165|gb|CK064852.1|CK064852
genomic: GGTTAAAGTTGCCTTCCCAGAGAGATGGTTTGGACGAGGTGTCAATTAAGgttgactgtt ... ttggtttcagCAAAGATATGGAGAGAATGCTGGACAACTACTTGATTCAAACGAAGCGTTG
EST: GGTTAAAGTTGCCTTCCCAGAGAGATGGTTTGGACGAGGTGTCAATTAAG CAAAGATATGGAGAGAATGCTGGACAACTACTTGATTCAAACGAAGCGTTG
genomic: GGTTAAAGTTGCCTTCCCAGAGAGATGGTTTGGACGAGGTGTCAATTAAGgttgactgtt ... ttggtttcagCAAAGATATGGAGAGAATGCTGGACAACTACTTGATTCAAACGAAGCGTTG
ccaatatgttcattttgtggttaatattatcataacacgtgaactttggtttcagCAAAGATATGGAGAGAATGCTGGACAACTACTTGATTCAAACGAAGCGTTGTTGAAAGCATCTGCAAGTGGACAATCTTCAGG
tcataac putative branch site (score: 2)
ttaatattatcataac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgactgttatctataatcattgattgatgttgtttctatagattcctcacctcaccaatatgttcattttgtggttaatattatcataacacgtgaactttggtttcagCAAAGATATGGAGAGAATGCTGGACAACTACTTGATTCAAACGAAGCGTTGTTGAAAGCATCTGCAAGTGGACAATCTTCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA