1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...actgagccagtgctatggctacaatgatatcttgctaatactgaaaatattccttgttatgatgctattttgttctatgatatatcttttcacgttctagGCTTGTGCATATGTGGAGAAACATGTATGAGTGCCATCAGGTTCAGAACCACATTGCCCAGCAAGCCAATCTTCTAGGCAATTTACCAGGGAATGAACCA
species | Oryza sativa |
transcript | LOC_Os01g40330.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGCTCAGAGATGAGGAGTTATATCCTCAGATTATTGAATTATCTGCAGG GCTTGTGCATATGTGGAGAAACATGTATGAGTGCCATCAGGTTCAGAACCAEST: gi|58671997|gb|CK060683.1|CK060683
genomic: AAGCTCAGAGATGAGGAGTTATATCCTCAGATTATTGAATTATCTGCAGGgtgagcttca ... cacgttctagGCTTGTGCATATGTGGAGAAACATGTATGAGTGCCATCAGGTTCAGAACCA
EST: AAGCTCAGAGATGAGGAGTTATATCCTCAGATTATTGAATTATCTGCAGG GCTTGTGCATATGTGGAGAAACATGTATGAGTGCCATCAGGTTCAGAACCAEST: gi|33675729|gb|CF303968.1|CF303968
genomic: AAGCTCAGAGATGAGGAGTTATATCCTCAGATTATTGAATTATCTGCAGGgtgagcttca ... cacgttctagGCTTGTGCATATGTGGAGAAACATGTATGAGTGCCATCAGGTTCAGAACCA
EST: AAGCTCAGAGATGAGGAGTTATATCCTCAGATTATTGAATTATCTGCAGG GCTTGTGCATATGTGGAGAAACATGTATGAGTGCCATCAGGTTCAGAACCA
genomic: AAGCTCAGAGATGAGGAGTTATATCCTCAGATTATTGAATTATCTGCAGGgtgagcttca ... cacgttctagGCTTGTGCATATGTGGAGAAACATGTATGAGTGCCATCAGGTTCAGAACCA
aatattccttgttatgatgctattttgttctatgatatatcttttcacgttctagGCTTGTGCATATGTGGAGAAACATGTATGAGTGCCATCAGGTTCAGAACCACATTGCCCAGCAAGCCAATCTTCTAGGCAATTTACCAGGGAATGAACCA
tcttttcacgttct CT-rich tract
tatgatatatctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actgagccagtgctatggctacaatgatatcttgctaatactgaaaatattccttgttatgatgctattttgttctatgatatatcttttcacgttctagGCTTGTGCATATGTGGAGAAACATGTATGAGTGCCATCAGGTTCAGAACCACATTGCCCAGCAAGCCAATCTTCTAGGCAATTTACCAGGGAATGAACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
-ctgagcc
- - - - - tgctatg
- - - - - - - - - - - - - - - cttgcta
- - - - - - - - - - - - - - - - - - - tactgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgttct