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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaaaacgctagaatgatttacattgtgaaacggagaaagtattattcttaatttgcacttgaagtgatgttctcaattaattttttttcctctcatatagTGAATTACAACGCATGTCTAGAAGACGGAAATTCAGTTTCCAAATCTGAACGTCTTGAATTGAACCTTGCCAGTCGTACCG

Basic information

species Oryza sativa
transcript LOC_Os01g38359.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29638603|gb|CB643612.1|CB643612
EST:     GCGCCCATTACCGGACAAATCTCCCTCCAATCATGCAGATACTGTAATTG                         TGAATTACAACGCATGTCTAGAAGACGGAAATTCAGTTTCCAAATCTGAAC
genomic: GCGCCCATTACCGGACAAATCTCCCTCCAATCATGCAGATACTGTAATTGgtaagttcgt ... tctcatatagTGAATTACAACGCATGTCTAGAAGACGGAAATTCAGTTTCCAAATCTGAAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttaatttgcacttgaagtgatgttctcaattaattttttttcctctcatatagTGAATTACAACGCATGTCTAGAAGACGGAAATTCAGTTTCCAAATCTGAACGTCTTGAATTGAACCTTGCCAGTCGTACCG
                             aattaat  putative branch site (score: 3)
                               ttaattttttttcctc  CT-rich tract
                     atgttctcaattaatt  TA-rich tract