1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttaaaaatgatctttgatctattcacagaatcccactgttgccattttttcctggtctctcaaatttataggttacttactgcctatccaatttttgcagGTGCTGATGTAGCAGGTGGAAGGGGTTACTATTTAAAGGATGAAGGTGTCCTACTGAACTTGGCATTGATAAATTTTGGACTCGCTTTTCTGAGAAAGCG
species | Oryza sativa |
transcript | LOC_Os01g37837.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAATCACGTGGATCTTTGTAAGATGCTTGACATAGTAGCTTTGGAGAAAG GTGCTGATGTAGCAGGTGGAAGGGGTTACTATTTAAAGGATGAAGGTGTCCEST: gi|27577321|gb|CB000016.1|CB000016
genomic: GAATCACGTGGATCTTTGTAAGATGCTTGACATAGTAGCTTTGGAGAAAGgtatatggta ... atttttgcagGTGCTGATGTAGCAGGTGGAAGGGGTTACTATTTAAAGGATGAAGGTGTCC
EST: TAGCTTTGGAGAAAG GTGCTGATGTAGCAGGTGGAAGGGGTTACTATTTAAAGGATGAAGGTGCCC
genomic: TAGCTTTGGAGAAAGgtatatggta ... atttttgcagGTGCTGATGTAGCAGGTGGAAGGGGTTACTATTTAAAGGATGAAGGTGTCC
tttttcctggtctctcaaatttataggttacttactgcctatccaatttttgcagGTGCTGATGTAGCAGGTGGAAGGGGTTACTATTTAAAGGATGAAGGTGTCCTACTGAACTTGGCATTGATAAATTTTGGACTCGCTTTTCTGAGAAAGCG
tacttac putative branch site (score: 1)
tttttgc putative PPT
aaatttataggtta TA-rich tract