1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgcactgccaagtctttgttttctaatttctatgcatctttatcttcgtcactgaggatattaattttatggtaattgcagGAGGATGAAGCTACAAAGTGTGGTTCGTGTGGATCAATCTTCCATAAACAATGCTTCAGGAAAATAAGCATATGTCCTTGCGGTAAGGGTGCTGCCAGCA
species | Oryza sativa |
transcript | LOC_Os01g36870.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GATGATCCGCTAGCACTCATCTTTCCGTTTCAG GAGGATGAAGCTACAAAGTGTGGTTCGTGTGGATCAATCTTCCATAAACAAEST: gi|88845104|gb|CI084029.1|CI084029
genomic: GATGATCCGCTAGCACTCATCTTTCCGTTTCAGgtgcactgcc ... gtaattgcagGAGGATGAAGCTACAAAGTGTGGTTCGTGTGGATCAATCTTCCATAAACAA
EST: TGCTCGGCAAGCTTGTGATGATCCGCTAGCACTCATCTTTCCGTTTCAG GAGGATGAAGCTACAAAGTGTGGTTCGTGTGGATCAATCTTCCATAAACAAEST: gi|86431202|gb|CI083625.1|CI083625
genomic: TGCTCGGCAAGCTTGTGATGATCCGCTAGCACTCATCTTTCCGTTTCAGgtgcactgcc ... gtaattgcagGAGGATGAAGCTACAAAGTGTGGTTCGTGTGGATCAATCTTCCATAAACAA
EST: CTTGTGATGATCCGCTAGCACTCATCTTTCCGTTTCAG GAGGATGAAGCTACAAAGTGTGGTTCGTGTGGATCAATCTTCCATAAACAAEST: gi|87034311|gb|CI188935.1|CI188935
genomic: CTTGTGATGATCCGCTAGCACTCATCTTTCCGTTTCAGgtgcactgcc ... gtaattgcagGAGGATGAAGCTACAAAGTGTGGTTCGTGTGGATCAATCTTCCATAAACAA
EST: CTGCTCGGCAAGCTTGTGATGATCCGCTAGCACTCATCTTTCCGTTTCAG GAGGATGAAGCTACAAAGTGTGGTTCGTGTGGATCAATCTTCCATAAACAAEST: gi|29671935|gb|CB668210.1|CB668210
genomic: CTGCTCGGCAAGCTTGTGATGATCCGCTAGCACTCATCTTTCCGTTTCAGgtgcactgcc ... gtaattgcagGAGGATGAAGCTACAAAGTGTGGTTCGTGTGGATCAATCTTCCATAAACAA
EST: CTGCTCGGCAAGCTTGTGATGATCCGCTAGCACTCATCTTTCCGTTTCAG GAGGATGAAGCTACAAAGTGTGGTTCGTGTGGATCAATCTTCCATAAACAA
genomic: CTGCTCGGCAAGCTTGTGATGATCCGCTAGCACTCATCTTTCCGTTTCAGgtgcactgcc ... gtaattgcagGAGGATGAAGCTACAAAGTGTGGTTCGTGTGGATCAATCTTCCATAAACAA
tttctatgcatctttatcttcgtcactgaggatattaattttatggtaattgcagGAGGATGAAGCTACAAAGTGTGGTTCGTGTGGATCAATCTTCCATAAACAATGCTTCAGGAAAATAAGCATATGTCCTTGCGGTAAGGGTGCTGCCAGCA
tattaat putative branch site (score: 1)
atattaattttatggt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcactgccaagtctttgttttctaatttctatgcatctttatcttcgtcactgaggatattaattttatggtaattgcagGAGGATGAAGCTACAAAGTGTGGTTCGTGTGGATCAATCTTCCATAAACAATGCTTCAGGAAAATAAGCATATGTCCTTGCGGTAAGGGTGCTGCCAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC