Sequence
atgc intronic sequence ATGC exonic sequence...actcatctttaaaattggaaagcctctggtgaaggaagattttgtaactgattatgactgaagagcaatgatatactaattgaccaatgttgatttttagGTCCTTGTGCGGAATATACCGCCTGATCCTGATGAATCAATTGGTGAGCTTGTGGAACATTTCTTCCTTGTAAACCATCCTGACCATTATCTTACGCACC
Basic information
species | Oryza sativa |
transcript | LOC_Os01g35050.4 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os01g35050.3 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G021194_T01 (Zea mays), 3'ss of exon 4
----------------------------------------------------------------------------------------actcatctttaaaattggaaag-----cctctggtgaaggaagattttgtaactgattatgactgaagagcaatgatatactaa------ttgaccaatgttgat-ttttagGTCCTTGTGCGGAATATACCGCCTGATCCTGATGAATCAATTGGTGAGCTTGTGGAACATTTCTTCCTTGTAAACCATCCTGACCATTATCTTACGCACC
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gtatgactaacctatgattgagttatgccttgaacacatagtgctatccagatacttaaagttgaaatttgtactgttactgcatttcacatagattttgaggcgagaacacgtttcttttttcccctaaactgatcaagtggattttgttgttatgggtatgacttgctgtatgcgcttactcaatgattatattttagGTCCTTGTGCGGAATATACCGCCTGATCCAGATGAATCAATTAGTGAGCTTGTGGAACATTTCTTTCTTGTGAATCATCCTGGTCACTATCTGACACATC
upper sequence: LOC_Os01g35050.3 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G163334_T01 (Zea mays), 3'ss of exon 3
----------------------------------------------------------------------------------------actcatctttaaaattggaaag-----cctctggtgaaggaagattttgtaactgattatgactgaagagcaa--tgatatactaattgac-caatgttgat-ttttagGTCCTTGTGCGGAATATACCGCCTGATCCTGATGAATCAATTGGTGAGCTTGTGGAACATTTCTTCCTTGTAAACCATCCTGACCATTATCTTACGCACC
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gtatgactaacctatgattgagttatgccttgaacacatagtgctatccagacacttaaagttgaaatttgtactgttactgcatttcacatagattttgaggcgagaacacgtttcttttttcccctaaactgatcaagtggattttgttatgggtatgacttgttgtatgcgcttactcaatgattatattttagGTCCTTGTGCGGAATATACCGCCTGATCCAGATGAATCAATTAGTGAGCTTGTGGAACATTTCTTTCTTGTGAATCATCCTGGTCACTATCTGACACATC
upper sequence: LOC_Os01g35050.3 (Oryza sativa), 3'ss of exon 4
lower sequence: GLYMA02G43910.2 (Glycine max), 3'ss of exon 4
actcatctttaaaattggaaagcctctggtgaaggaagattttgtaactgattatgactgaagagcaatgata--tactaattgac-caatgttgattttt--agGTCCTTGTGCGGAATATACCGCCTGATCCTGATGAATCAATTGGTGAGCTTGTGGAACATTTCTTCCTTGTAAACCATCCTGACCATTATCTTACGCACC
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----accttcctacctttaaaaa-tatagaggaaaaacttttgacaataaactttatcttgtgtttccccatgcttgctccttcatgcaatttacatttgtgcagGTACTTGTTAGAAATGTACCACCTGATCCTGATGAATCGGTCAGTGAGCTAGTGGAACATTTCTTTTTGGTCAATCATCCAGATCACTATCTCACTCAGC
upper sequence: LOC_Os01g35050.3 (Oryza sativa), 3'ss of exon 4
lower sequence: AT1G11960.1 (Arabidopsis thaliana), 3'ss of exon 4
actcatctttaaaattggaaagcctctggtgaaggaagattttgtaactgattatgactgaagagcaatgatatactaattgaccaatgttgatttttagGTCCTTGTGCGGAATATACCGCCTGATCCTGATGAATCAATTGGTGAGCTTGTGGAACATTTCTTCCTTGTAAACCATCCTGACCATTATCTTACGCACC
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----------------------------gtaaagcaattatatgtgatcagttttgtttcttgatgttagaaccttggactgagccagttactttcccagGTTTTGGTTAGGAACGTACCAGCGGACCCAGATGAGTCCATTAGTGACAGTGTGGAACATTTCTTTCTAGTTAACCATCCGGACCATTATCTTACGCATCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|58609230|gb|CK037263.1|CK037263EST: TGCGTCTGCGCTTTCTTGCATCAGAGAAGCGCCGCCCAGATCAGTTCACG GTCCTTGTGCGGAATATACCGCCTGATCCTGATGAATCAATTGGTGAGCTT
genomic: TGCGTCTGCGCTTTCTTGCATCAGAGAAGCGCCGCCCAGATCAGTTCACGgtatgatctt ... tgatttttagGTCCTTGTGCGGAATATACCGCCTGATCCTGATGAATCAATTGGTGAGCTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aactgattatgactgaagagcaatgatatactaattgaccaatgttgatttttagGTCCTTGTGCGGAATATACCGCCTGATCCTGATGAATCAATTGGTGAGCTTGTGGAACATTTCTTCCTTGTAAACCATCCTGACCATTATCTTACGCACC
ttttt CT-rich tract
aatgatatactaatt TA-rich tract