1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgagtgaaacccttctgcaccacttatttgtttttttttgtaagcataaaacttaattccaagaacaaatataaaaccctgtccattttctcaataaaaagataaattttagcgttcatcgtaatctggacccaaatgatttgtatgatcttgtcattcatccacagATTGGGCAGGCATGTTCGCCGTTGGTGAAGAAGGCAATGCTGTGGGATTCCATCATGGAGCTCGGGAGGTCGTACGAGAACCTGATGGGACTCGTCCTCT
species | Oryza sativa |
transcript | LOC_Os01g34880.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTTTTTCTAGTATTCTTGGGTTCATGCCTACTGGTTGGTGCATTCTTCTG ATTGGGCAGGCATGTTCGCCGTTGGTGAAGAAGGCAATGCTGTGGGATTCCEST: gi|88842424|gb|CI081680.1|CI081680
genomic: TTTTTGCTAGTATTCTTGGGTTCATGCCTACTGGTTGGTGCATTCTTCTGgtgagtgaaa ... tcatccacagATTGGGCAGGCATGTTCGCCGTTGGTGAAGAAGGCAATGCTGTGGGATTCC
EST: TTTTTGCTAGTATTCTTGGGTTCATGCCTACTGGTTGGTGCATTCTTCTG ATTGGGCAGGCATGTTCGCCGTTGGTGAAGAAGGCAATGCTGTGGGATTCCEST: gi|89194773|gb|CI003237.1|CI003237
genomic: TTTTTGCTAGTATTCTTGGGTTCATGCCTACTGGTTGGTGCATTCTTCTGgtgagtgaaa ... tcatccacagATTGGGCAGGCATGTTCGCCGTTGGTGAAGAAGGCAATGCTGTGGGATTCC
EST: TTTTTGCTAGTATTCTTGGGTTCATGCCTACTGGTTGGTGCATTCTTCTG ATTGGGCAGGCATGTTCGCCGTTGGTGAAGAAGGCAATGCTGTGGGATTCCEST: gi|87016737|gb|CI275739.1|CI275739
genomic: TTTTTGCTAGTATTCTTGGGTTCATGCCTACTGGTTGGTGCATTCTTCTGgtgagtgaaa ... tcatccacagATTGGGCAGGCATGTTCGCCGTTGGTGAAGAAGGCAATGCTGTGGGATTCC
EST: TGGGTTCATGCCTACTGGTTGGTGCATTCTTCTG ATTGGGCAGGCATGTTCGCCGTTGGTGAAGAAGGCAATGCTGTGGGATTCC
genomic: TGGGTTCATGCCTACTGGTTGGTGCATTCTTCTGgtgagtgaaa ... tcatccacagATTGGGCAGGCATGTTCGCCGTTGGTGAAGAAGGCAATGCTGTGGGATTCC
cgttcatcgtaatctggacccaaatgatttgtatgatcttgtcattcatccacagATTGGGCAGGCATGTTCGCCGTTGGTGAAGAAGGCAATGCTGTGGGATTCCATCATGGAGCTCGGGAGGTCGTACGAGAACCTGATGGGACTCGTCCTCT
ttcatcc CT-rich tract
aaatgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgaaacccttctgcaccacttatttgtttttttttgtaagcataaaacttaattccaagaacaaatataaaaccctgtccattttctcaataaaaagataaattttagcgttcatcgtaatctggacccaaatgatttgtatgatcttgtcattcatccacagATTGGGCAGGCATGTTCGCCGTTGGTGAAGAAGGCAATGCTGTGGGATTCCATCATGGAGCTCGGGAGGTCGTACGAGAACCTGATGGGACTCGTCCTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT