1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atcactggctcccaatgtggcatgatctaatcgtcatgtgtcacaactggagataactcaatatgcattgcatacgtgcgtgcattattccatgttccagGAGGCGAGGTACATAAAAGTTGATACAAATCAAAGTTTAACAAGTAGAAGCATAAATAGTACTTATTACACGGGCAACCCAAAGGCCCAGCTCATAGAGA
species | Oryza sativa |
transcript | LOC_Os01g29320.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
actggagataactcaatatgcattgcatacgtgcgtgcattattccatgttccagGAGGCGAGGTACATAAAAGTTGATACAAATCAAAGTTTAACAAGTAGAAGCATAAATAGTACTTATTACACGGGCAACCCAAAGGCCCAGCTCATAGAGA
agataac putative branch site (score: 3)
ttattcc putative PPT
attatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcactggctcccaatgtggcatgatctaatcgtcatgtgtcacaactggagataactcaatatgcattgcatacgtgcgtgcattattccatgttccagGAGGCGAGGTACATAAAAGTTGATACAAATCAAAGTTTAACAAGTAGAAGCATAAATAGTACTTATTACACGGGCAACCCAAAGGCCCAGCTCATAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - -gctccca
- - - - - - - - - ggcatga
- - - - - - - - - - - - - - - - - catgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcgtgc