1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...taggtgtaagcatgtgaatgtgttacatgaacagaaattttgtcattatcgacctgtcatagtatgatccctaacttatttgctggaatatcttccaaagGTTGGTGAGTTGGTTGGTGGAAGCCAAAGGGAGGAACGTCTGGACCTTCTCAAAACAAG
species | Oryza sativa |
transcript | LOC_Os01g27520.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGATGTTCTTGTGCCCAAG GTTGGTGAGTTGGTTGGTGGAAGCCAAAGGGAGGAACGTCTGGACCTTCTCEST: gi|5003639|gb|AU068788.1|AU068788
genomic: TGGATGTTCTTGTGCCCAAGgtaaatataa ... tcttccaaagGTTGGTGAGTTGGTTGGTGGAAGCCAAAGGGAGGAACGTCTGGACCTTCTC
EST: TCAATGATGATCAGAAGACTGTAGCTGCTATGGATGTTCTTGTGCCCAAG GTTGGTGAGTTGGTTGGTGGAAGCCAAAEST: gi|88503370|gb|CI430876.1|CI430876
genomic: TCAATGATGATCAGAAGACTGTAGCTGCTATGGATGTTCTTGTGCCCAAGgtaaatataa ... tcttccaaagGTTGGTGAGTTGGTTGGTGGAAGCCAAA
EST: ATGATCAGAAGACTGTAGCTGCTATGGATGTTCTTGTGCCCAAG GTTGGTGAGTTGGTTGGTGGAAGCCAAAGGGAGGAACGTCTGGACCTTCTCEST: gi|87020011|gb|CI299409.1|CI299409
genomic: ATGATCAGAAGACTGTAGCTGCTATGGATGTTCTTGTGCCCAAGgtaaatataa ... tcttccaaagGTTGGTGAGTTGGTTGGTGGAAGCCAAAGGGAGGAACGTCTGGACCTTCTC
EST: GAAGACTGTAGCTGCTATGGATGTTCTTGTGCCCAAG GTTGGTGAGTTGGTTGGTGGAAGCCAAAGGGAGGAACGTCTGGACCTTCTCEST: gi|66912938|gb|CX099786.1|CX099786
genomic: GAAGACTGTAGCTGCTATGGATGTTCTTGTGCCCAAGgtaaatataa ... tcttccaaagGTTGGTGAGTTGGTTGGTGGAAGCCAAAGGGAGGAACGTCTGGACCTTCTC
EST: TCAATGATGATCAGAAGACTGTAGCTGCTATGGATGTTCTTGTGCCCAAG GTTGGCGAGTTGGTTGGTGGAAGCCAAAGGGAGGAACGTCTGGACCTTCTCEST: gi|58683506|gb|CK072193.1|CK072193
genomic: TCAATGATGATCAGAAGACTGTAGCTGCTATGGATGTTCTTGTGCCCAAGgtaaatataa ... tcttccaaagGTTGGTGAGTTGGTTGGTGGAAGCCAAAGGGAGGAACGTCTGGACCTTCTC
EST: TCAATGATGATCAGAAGACTGTAGCTGCTATGGATGTTCTTGTGCCCAAG GTTGGTGAGTTGGTTGGTGGAAGCCAAAGGGAGGAACGTCTGGACCTTCTCEST: gi|29630322|gb|CB635331.1|CB635331
genomic: TCAATGATGATCAGAAGACTGTAGCTGCTATGGATGTTCTTGTGCCCAAGgtaaatataa ... tcttccaaagGTTGGTGAGTTGGTTGGTGGAAGCCAAAGGGAGGAACGTCTGGACCTTCTC
EST: TCAATGATGATCAGAAGACTGTAGCTGCTATGGATGTTCTTGTGCCCAAG GTTGGCGAGTTGGTTGGTGGAAGCCAAAGGGAGGAACGTCTGGACCTTCTCEST: gi|29620154|gb|CB625166.1|CB625166
genomic: TCAATGATGATCAGAAGACTGTAGCTGCTATGGATGTTCTTGTGCCCAAGgtaaatataa ... tcttccaaagGTTGGTGAGTTGGTTGGTGGAAGCCAAAGGGAGGAACGTCTGGACCTTCTC
EST: TCAATGATGATCAGAAGACTGTAGCTGCTATGGATGTTCTTGTGCCCAAG GTTGGCGAGTTGGTTGGTGGAAGCCAAAGGGAGGAACGTCTGGACCTTCTCEST: gi|88515783|gb|CI443437.1|CI443437
genomic: TCAATGATGATCAGAAGACTGTAGCTGCTATGGATGTTCTTGTGCCCAAGgtaaatataa ... tcttccaaagGTTGGTGAGTTGGTTGGTGGAAGCCAAAGGGAGGAACGTCTGGACCTTCTC
EST: TCAATGATGATCAGAAGACTGTAGCTGCTATGGATGTTCTTGTGCCCAAG GTTGGTGAGTTGGTTGGTGGAAGCCAAAGGGAGGAACNTCTGGACCTTCTCEST: gi|5003638|gb|AU068787.1|AU068787
genomic: TCAATGATGATCAGAAGACTGTAGCTGCTATGGATGTTCTTGTGCCCAAGgtaaatataa ... tcttccaaagGTTGGTGAGTTGGTTGGTGGAAGCCAAAGGGAGGAACGTCTGGACCTTCTC
EST: TCAATGATGATCAGAAGACTGTAGCTGCTATGGATGTTCTTGTGCCCAAG GTTGGTGAGTTGGTTGGTGGAAGCCAAAGGGAGGAACGTCTGGACCTTCTCEST: gi|89198769|gb|CI003506.1|CI003506
genomic: TCAATGATGATCAGAAGACTGTAGCTGCTATGGATGTTCTTGTGCCCAAGgtaaatataa ... tcttccaaagGTTGGTGAGTTGGTTGGTGGAAGCCAAAGGGAGGAACGTCTGGACCTTCTC
EST: TCAATGATGATCAGAAGACTGTAGCTGCTATGGATGTTCTTGTGCCCAAG GTTGGTGAGTTGGTTGGTGGAAGCCAAAGGGAGGAACGTCTGGACCTTCTCEST: gi|29614514|gb|CB619527.1|CB619527
genomic: TCAATGATGATCAGAAGACTGTAGCTGCTATGGATGTTCTTGTGCCCAAGgtaaatataa ... tcttccaaagGTTGGTGAGTTGGTTGGTGGAAGCCAAAGGGAGGAACGTCTGGACCTTCTC
EST: TCAATGATGATCAGAAGACTGTAGCTGCTATGGATGTTCTTGTGCCCAAG GTTGGCGAGTTGGTTGGTGGAAGCCAAAGGGAGGAACGTCTGGACCTTCTCEST: gi|58688377|gb|CK077064.1|CK077064
genomic: TCAATGATGATCAGAAGACTGTAGCTGCTATGGATGTTCTTGTGCCCAAGgtaaatataa ... tcttccaaagGTTGGTGAGTTGGTTGGTGGAAGCCAAAGGGAGGAACGTCTGGACCTTCTC
EST: GTAGCTGCTATGGATGTTCTTGTGCCCAAG GTTGGCGAGTTGGTTGGTGGAAGCCAAAGGGAGGAACGTCTGGACCTTCTC
genomic: GTAGCTGCTATGGATGTTCTTGTGCCCAAGgtaaatataa ... tcttccaaagGTTGGTGAGTTGGTTGGTGGAAGCCAAAGGGAGGAACGTCTGGACCTTCTC
ttatcgacctgtcatagtatgatccctaacttatttgctggaatatcttccaaagGTTGGTGAGTTGGTTGGTGGAAGCCAAAGGGAGGAACGTCTGGACCTTCTCAAAACAAG
ccctaac putative branch site (score: 2)
tatcttcc putative PPT
taacttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taggtgtaagcatgtgaatgtgttacatgaacagaaattttgtcattatcgacctgtcatagtatgatccctaacttatttgctggaatatcttccaaagGTTGGTGAGTTGGTTGGTGGAAGCCAAAGGGAGGAACGTCTGGACCTTCTCAAAACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA