1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gttagcattgcttcttttcactcatgcacacgtgaatgtaaattctctattctgttttgtagtctaaatgtttgtgacccgatcttttatatgcagTTCAAGCTTTGCAAAGTTCGGTCTGTCCAGTTTGGACAGAAGGGCATTCCCTATCTGAACACCTATGATGGACGCACCATCCGCTACCCGGACCCTTTGA
species | Oryza sativa |
transcript | LOC_Os01g25610.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAGGATGCCAAG TTCAAGCTTTGCAAAGTTCGGTCTGTCCAGTTTGGACAGAAGGGCATTCCCEST: gi|86494823|gb|CI137456.1|CI137456
genomic: GAGGATGCCAAGgttagcattg ... ttatatgcagTTCAAGCTTTGCAAAGTTCGGTCTGTCCAGTTTGGACAGAAGGGCATTCCC
EST: ACACCAAGGGTCGCTTCCGCCTTCAGTCCGTCAAGGATGAGGATGCCAAG TTCAAGCTTTGCAAAGTTCGGTCTGTCCAGTTTGGACAGAAGGGCATTCCCEST: gi|109711574|gb|CI013179.1|CI013179
genomic: ACACCAAGGGTCGCTTCCGCCTTCAGTCCGTCAAGGATGAGGATGCCAAGgttagcattg ... ttatatgcagTTCAAGCTTTGCAAAGTTCGGTCTGTCCAGTTTGGACAGAAGGGCATTCCC
EST: GATGAGGATGCCAAG TTCAAGCTTTGCAAAGTTCGGTCTGTCCAGTTTGGACAGAAGGGCATTCCCEST: gi|117249752|gb|CT863374.1|CT863374
genomic: GATGAGGATGCCAAGgttagcattg ... ttatatgcagTTCAAGCTTTGCAAAGTTCGGTCTGTCCAGTTTGGACAGAAGGGCATTCCC
EST: ACACCAAGGGTCGCTTCCGCCTTCAGTCCGTCAAGGATGAGGATGCCAAG TTCAAGCTTTGCAAAGTTCGGTCTGTCCAGTTTGGACAGAAGGGCATTCCCEST: gi|87035387|gb|CI190009.1|CI190009
genomic: ACACCAAGGGTCGCTTCCGCCTTCAGTCCGTCAAGGATGAGGATGCCAAGgttagcattg ... ttatatgcagTTCAAGCTTTGCAAAGTTCGGTCTGTCCAGTTTGGACAGAAGGGCATTCCC
EST: ACACCAAGGGTCGCTTCCGCCTTCAGTCCGTCAAGGATGAGGATGCCAAG TTCAAGCTTTGCAAAGTTCGGTCTGTCCAGTTTGGACAGAAGGGCATTCCCEST: gi|33661683|gb|CF292650.1|CF292650
genomic: ACACCAAGGGTCGCTTCCGCCTTCAGTCCGTCAAGGATGAGGATGCCAAGgttagcattg ... ttatatgcagTTCAAGCTTTGCAAAGTTCGGTCTGTCCAGTTTGGACAGAAGGGCATTCCC
EST: ACACCAAGGGTCGCTTCCGCCTTCAGTCCGTCAAGGATGAGGATGCCAAG TTCAAGCTTTGCAAAGTTCGGTCTGTCCAGTTTGGACAGAAGGGCATTCCCEST: gi|87035382|gb|CI190004.1|CI190004
genomic: ACACCAAGGGTCGCTTCCGCCTTCAGTCCGTCAAGGATGAGGATGCCAAGgttagcattg ... ttatatgcagTTCAAGCTTTGCAAAGTTCGGTCTGTCCAGTTTGGACAGAAGGGCATTCCC
EST: ACACCAAGGGTCGCTTCCGCCTTCAGTCCGTCAAGGATGAGGATGCCAAG TTCAAGCTTTGCAAAGTTCGGTCTGTCCAGTTTGGACAGAAGGGCATTCCCEST: gi|33675492|gb|CF303731.1|CF303731
genomic: ACACCAAGGGTCGCTTCCGCCTTCAGTCCGTCAAGGATGAGGATGCCAAGgttagcattg ... ttatatgcagTTCAAGCTTTGCAAAGTTCGGTCTGTCCAGTTTGGACAGAAGGGCATTCCC
EST: ACACCAAGGGTCGCTTCCGCCTTCAGTCCGTCAAGGATGAGGATGCCAAG TTCAAGCTTTGCAAAGTTCGGTCTGTCCAGTTTGGACAGAAGGGCATTCCCEST: gi|218492817|gb|FG968356.1|FG968356
genomic: ACACCAAGGGTCGCTTCCGCCTTCAGTCCGTCAAGGATGAGGATGCCAAGgttagcattg ... ttatatgcagTTCAAGCTTTGCAAAGTTCGGTCTGTCCAGTTTGGACAGAAGGGCATTCCC
EST: ACACCAAGGGTCGCTTCCGCCTTCAGTCCGTCAAGGATGAGGATGCCAAG TTCAAGCTTTGCAAAGTTCGGTCTGTCCAGTTTGGACAGAAGGGCATTCCCEST: gi|33677983|gb|CF306222.1|CF306222
genomic: ACACCAAGGGTCGCTTCCGCCTTCAGTCCGTCAAGGATGAGGATGCCAAGgttagcattg ... ttatatgcagTTCAAGCTTTGCAAAGTTCGGTCTGTCCAGTTTGGACAGAAGGGCATTCCC
EST: ACACCAAGGGTCGCTTCCGCCTTCAGTCCGTCAAGGATGAGGATGCCAAG TTCAAGCTTTGCAAAGTTCGGTCTGTCCAGTTTGGACAGAAGGGCATTCCCEST: gi|58682645|gb|CK071332.1|CK071332
genomic: ACACCAAGGGTCGCTTCCGCCTTCAGTCCGTCAAGGATGAGGATGCCAAGgttagcattg ... ttatatgcagTTCAAGCTTTGCAAAGTTCGGTCTGTCCAGTTTGGACAGAAGGGCATTCCC
EST: ACACCAAGGGTCGCTTCCGCCTTCAGTCCGTCCAGGATGAGGATGCCAAG TTCAAGCTCTGCAAAGTTCGGTCTGTCCAGTTTGGACAGAAGGGCATTCCCEST: gi|218494994|gb|FG969750.1|FG969750
genomic: ACACCAAGGGTCGCTTCCGCCTTCAGTCCGTCAAGGATGAGGATGCCAAGgttagcattg ... ttatatgcagTTCAAGCTTTGCAAAGTTCGGTCTGTCCAGTTTGGACAGAAGGGCATTCCC
EST: ACACCAAGGGTCGCTTCCGCCTTCAGTCCGTCAAGGATGAGGATGCCAAG TTCAAGCTTTGCAAAGTTCGGTCTGTCCAGTTTGGACAGAAGGGCATTCCCEST: gi|33829204|gb|CF340424.1|CF340424
genomic: ACACCAAGGGTCGCTTCCGCCTTCAGTCCGTCAAGGATGAGGATGCCAAGgttagcattg ... ttatatgcagTTCAAGCTTTGCAAAGTTCGGTCTGTCCAGTTTGGACAGAAGGGCATTCCC
EST: ACACCAAGGGTCGCTTCCGCCTTCAGTCCGTCAAGGATGAGGATGCCAAG TTCAAGCTTTGCAAAGTTCGGTCTGTEST: gi|218495953|gb|FG968132.1|FG968132
genomic: ACACCAAGGGTCGCTTCCGCCTTCAGTCCGTCAAGGATGAGGATGCCAAGgttagcattg ... ttatatgcagTTCAAGCTTTGCAAAGTTCGGTCTGT
EST: CACCAA-GGTCGCTTCCCGCCTTCAGTCCGTCAAGGATGAGGATGCCAAG TTCAAGCTTTGCAAAGTTCGGTCTGTCCAGTTTGGACAGAAGGGCATTCCCEST: gi|58592361|gb|CF990669.1|CF990669
genomic: CACCAAGGGTCGCTT-CCGCCTTCAGTCCGTCAAGGATGAGGATGCCAAGgttagcattg ... ttatatgcagTTCAAGCTTTGCAAAGTTCGGTCTGTCCAGTTTGGACAGAAGGGCATTCCC
EST: ACACCAAGGGTCGCTTCCGCCTTCAGTCCGTCAAGGATGAGGATGCCAAG TTCAAGCTTTGCAAAGTTCGGTCTGTCCAGTTTGGACAGAAGGGCATTCCCEST: gi|218504837|gb|FG949405.1|FG949405
genomic: ACACCAAGGGTCGCTTCCGCCTTCAGTCCGTCAAGGATGAGGATGCCAAGgttagcattg ... ttatatgcagTTCAAGCTTTGCAAAGTTCGGTCTGTCCAGTTTGGACAGAAGGGCATTCCC
EST: ACACCAAGGGTCGCTTCCGCCTTCAGTCCGTCAAGGATGAGGATGCCAAG TTCAAGCTTTGCAAAGTTCGGTCTGTCCAGTTTGGACAGAAGGGCATTCCCEST: gi|86854670|gb|CI258963.1|CI258963
genomic: ACACCAAGGGTCGCTTCCGCCTTCAGTCCGTCAAGGATGAGGATGCCAAGgttagcattg ... ttatatgcagTTCAAGCTTTGCAAAGTTCGGTCTGTCCAGTTTGGACAGAAGGGCATTCCC
EST: ACACCAAGGGTCGCTTCCGCCTTCAGTCCGTCAAGGATGAGGATGCCAAG TTCAAGCTTTGCAAAGTTCGGTCTGTCCAGTTTGGACAGAAGGGCATTCCCEST: gi|218497016|gb|FG965105.1|FG965105
genomic: ACACCAAGGGTCGCTTCCGCCTTCAGTCCGTCAAGGATGAGGATGCCAAGgttagcattg ... ttatatgcagTTCAAGCTTTGCAAAGTTCGGTCTGTCCAGTTTGGACAGAAGGGCATTCCC
EST: ACACCAAGGGTCGCTTCCGCCTTCAGTCCGTCAAGGATGAGGATGCCAAG TTCAAGCTTTGCAAAGTTCGGTCTGTCCAGTTTGGACAGAAGGGCATTCCCEST: gi|33801083|gb|CF326414.1|CF326414
genomic: ACACCAAGGGTCGCTTCCGCCTTCAGTCCGTCAAGGATGAGGATGCCAAGgttagcattg ... ttatatgcagTTCAAGCTTTGCAAAGTTCGGTCTGTCCAGTTTGGACAGAAGGGCATTCCC
EST: ACACCAAGGGTCGCTTCCGCCTTCAGTCCGTCAAGGATGAGGATGCCAAG TTCAAGCTTTGCAAAGTTCGGTCTGTCCAGTTTGGACAGAAGGGCATTCCCEST: gi|86495204|gb|CI137837.1|CI137837
genomic: ACACCAAGGGTCGCTTCCGCCTTCAGTCCGTCAAGGATGAGGATGCCAAGgttagcattg ... ttatatgcagTTCAAGCTTTGCAAAGTTCGGTCTGTCCAGTTTGGACAGAAGGGCATTCCC
EST: ACACCAAGGGTCGCTTCCGCCTTCAGTCCGTCAAGGATGAGGATGCCAAG TTCAAGCTTTGCAAAGTTCGGTCTGTCCAGTTTGGACAGAAGGGCATTCCCEST: gi|218478245|gb|FG957059.1|FG957059
genomic: ACACCAAGGGTCGCTTCCGCCTTCAGTCCGTCAAGGATGAGGATGCCAAGgttagcattg ... ttatatgcagTTCAAGCTTTGCAAAGTTCGGTCTGTCCAGTTTGGACAGAAGGGCATTCCC
EST: ACACCAAGGGTCGCTTCCGCCTTCAGTCCGTCAAGGATGAGGATGCCAAG TTCAAGCTTTGCAAAGTTCGGTCTGTCCAGTTTGGACAGAAGGGCATTCCCEST: gi|58675811|gb|CK064498.1|CK064498
genomic: ACACCAAGGGTCGCTTCCGCCTTCAGTCCGTCAAGGATGAGGATGCCAAGgttagcattg ... ttatatgcagTTCAAGCTTTGCAAAGTTCGGTCTGTCCAGTTTGGACAGAAGGGCATTCCC
EST: ACACCAAGGGTCGCTTCCGCCTTCAGTCCGTCAAGGATGAGGATGCCAAG TTCAAGCTTTGCAAAGTTCGGTCTGTCCAGTTTGGACAGAAGGGCATTCCC
genomic: ACACCAAGGGTCGCTTCCGCCTTCAGTCCGTCAAGGATGAGGATGCCAAGgttagcattg ... ttatatgcagTTCAAGCTTTGCAAAGTTCGGTCTGTCCAGTTTGGACAGAAGGGCATTCCC
attctctattctgttttgtagtctaaatgtttgtgacccgatcttttatatgcagTTCAAGCTTTGCAAAGTTCGGTCTGTCCAGTTTGGACAGAAGGGCATTCCCTATCTGAACACCTATGATGGACGCACCATCCGCTACCCGGACCCTTTGA
gtctaaa putative branch site (score: 83)
tcttttat putative PPT
atcttttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagcattgcttcttttcactcatgcacacgtgaatgtaaattctctattctgttttgtagtctaaatgtttgtgacccgatcttttatatgcagTTCAAGCTTTGCAAAGTTCGGTCTGTCCAGTTTGGACAGAAGGGCATTCCCTATCTGAACACCTATGATGGACGCACCATCCGCTACCCGGACCCTTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA