1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgagttgagtattccactaatcctaactcgtatgatatatgttctaacaaaactcaacagatacaaactaactagccatgtatttttcccctgtgatcagCTCATTACTGGTGGGTATGATTATAAGTCTGTCAGAAGATGGACAACTAAAAGGAAGTTAGGTTACAGCCTACTTGAATGTGATAAG
species | Oryza sativa |
transcript | LOC_Os01g25370.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTAACAAGTTTTTGAAATGCCACTTCTTCAATACCTTTTTCTACAAAAAG CTCATTACTGGTGGGTATGATTATAAGTCTGTCAGAAGNTGGGCAACTAAAEST: gi|426920|gb|D22996.1|D22996
genomic: CTAACAAGTTTTTGAAATGCCACTTCTTCAATACCTTTTTCTACAAAAAGgtcagcttct ... ctgtgatcagCTCATTACTGGTGGGTATGATTATAAGTCTGTCAGAAGATGGACAACTAAA
EST: CTTTTTCTACAAAAAG CTCATTACTGGTGGGTATGATTATAAGTCTGTCAGAAGATGGACAACTAAAEST: gi|218488315|gb|FG953540.1|FG953540
genomic: CTTTTTCTACAAAAAGgtcagcttct ... ctgtgatcagCTCATTACTGGTGGGTATGATTATAAGTCTGTCAGAAGATGGACAACTAAA
EST: CTAACAAGTTTTTGAAATGCCACTTCTTCAATACCTTTTTCTACAAAAAG CTCATTACTGGTGGGTATGATTATAAGTCTGTCAGAAGATGGACAACTAAA
genomic: CTAACAAGTTTTTGAAATGCCACTTCTTCAATACCTTTTTCTACAAAAAGgtcagcttct ... ctgtgatcagCTCATTACTGGTGGGTATGATTATAAGTCTGTCAGAAGATGGACAACTAAA
aacaaaactcaacagatacaaactaactagccatgtatttttcccctgtgatcagCTCATTACTGGTGGGTATGATTATAAGTCTGTCAGAAGATGGACAACTAAAAGGAAGTTAGGTTACAGCCTACTTGAATGTGATAAG
aactaac putative branch site (score: 1)
tgtatttttcccct putative PPT
atgtattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgagttgagtattccactaatcctaactcgtatgatatatgttctaacaaaactcaacagatacaaactaactagccatgtatttttcccctgtgatcagCTCATTACTGGTGGGTATGATTATAAGTCTGTCAGAAGATGGACAACTAAAAGGAAGTTAGGTTACAGCCTACTTGAATGTGATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA