1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgagttgagtattccactaatcctaactcgtatgatatatgttctaacaaaactcaacagatacaaactaactagccatgtatttttcccctgtgatcagCTCATTACTGGTGGGTATGATTATAAGTCTGTCAGAAGATGGACAACTAAAAGGAAGTTAGGTTACAGCCTACTTGAATGTGATAAG
species | Oryza sativa |
transcript | LOC_Os01g25370.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTAACAAGTTTTTGAAATGCCACTTCTTCAATACCTTTTTCTACAAAAAG CTCATTACTGGTGGGTATGATTATAAGTCTGTCAGAAGATGGACAACTAAAEST: gi|218485916|gb|FG967011.1|FG967011
genomic: CTAACAAGTTTTTGAAATGCCACTTCTTCAATACCTTTTTCTACAAAAAGgtcagcttct ... ctgtgatcagCTCATTACTGGTGGGTATGATTATAAGTCTGTCAGAAGATGGACAACTAAA
EST: CTTCTTCAATACCTTTTTCTACAAAAAG CTCATTACTGGTGGGTATGATTATAAGTCTGTCAGAAGATGGACAACTAAAEST: gi|29662158|gb|CB658433.1|CB658433
genomic: CTTCTTCAATACCTTTTTCTACAAAAAGgtcagcttct ... ctgtgatcagCTCATTACTGGTGGGTATGATTATAAGTCTGTCAGAAGATGGACAACTAAA
EST: CTAACAAGTTTTTGAAATGCCACTTCTTCAATACCTTTTTCTACAAAAAG CTCATTACTGGTGGGTATGATTATAAGTCTGTCAGAAGATGGACAACTAAAEST: gi|428598|gb|D24750.1|D24750
genomic: CTAACAAGTTTTTGAAATGCCACTTCTTCAATACCTTTTTCTACAAAAAGgtcagcttct ... ctgtgatcagCTCATTACTGGTGGGTATGATTATAAGTCTGTCAGAAGATGGACAACTAAA
EST: CTAACAAGTTTTTGAAATGCCACTTCTTCAATACCTTTTTCTACAAAAAG CTCATTACTGGTGGGTATGATTATAAGTCTGTCAGAAGNTGGGCAACTAAAEST: gi|58590052|gb|CF988360.1|CF988360
genomic: CTAACAAGTTTTTGAAATGCCACTTCTTCAATACCTTTTTCTACAAAAAGgtcagcttct ... ctgtgatcagCTCATTACTGGTGGGTATGATTATAAGTCTGTCAGAAGATGGACAACTAAA
EST: TTTTGAAATGCCACTTCTTCAATACC-TTTTCTACAAAAAG CTCATTACGGGTGGGTATGATTATAAGTCTGTCAGAAGATGGACAACTAAAEST: gi|426920|gb|D22996.1|D22996
genomic: TTTTGAAATGCCACTTCTTCAATACCTTTTTCTACAAAAAGgtcagcttct ... ctgtgatcagCTCATTACTGGTGGGTATGATTATAAGTCTGTCAGAAGATGGACAACTAAA
EST: CTTTTTCTACAAAAAG CTCATTACTGGTGGGTATGATTATAAGTCTGTCAGAAGATGGACAACTAAAEST: gi|218488315|gb|FG953540.1|FG953540
genomic: CTTTTTCTACAAAAAGgtcagcttct ... ctgtgatcagCTCATTACTGGTGGGTATGATTATAAGTCTGTCAGAAGATGGACAACTAAA
EST: CTAACAAGTTTTTGAAATGCCACTTCTTCAATACCTTTTTCTACAAAAAG CTCATTACTGGTGGGTATGATTATAAGTCTGTCAGAAGATGGACAACTAAA
genomic: CTAACAAGTTTTTGAAATGCCACTTCTTCAATACCTTTTTCTACAAAAAGgtcagcttct ... ctgtgatcagCTCATTACTGGTGGGTATGATTATAAGTCTGTCAGAAGATGGACAACTAAA
aacaaaactcaacagatacaaactaactagccatgtatttttcccctgtgatcagCTCATTACTGGTGGGTATGATTATAAGTCTGTCAGAAGATGGACAACTAAAAGGAAGTTAGGTTACAGCCTACTTGAATGTGATAAG
aactaac putative branch site (score: 1)
tgtatttttcccct putative PPT
atgtattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgagttgagtattccactaatcctaactcgtatgatatatgttctaacaaaactcaacagatacaaactaactagccatgtatttttcccctgtgatcagCTCATTACTGGTGGGTATGATTATAAGTCTGTCAGAAGATGGACAACTAAAAGGAAGTTAGGTTACAGCCTACTTGAATGTGATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - taacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - caacaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agccatg