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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgtcagcgccattacactgttggcgtttagtgttcactaacatatggtcaaaaatcattttagttcttttcattaactcatttcatgcttgtctttcagGTTACTTTCTTACTGTATTATTCAGGATTAAGGTCCCATCATAAAAGTTCTTCCTTGAAACCGCATGTCAGTGGGAATTTCATACAAGATTG

Basic information

species Oryza sativa
transcript LOC_Os01g25189.4
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88349161|gb|CI678133.1|CI678133
EST:     CTGACCGTGGAATAGAGCTGTTGTCTGCAACCTTCATTTTTAGTGTTATC                         GTCACTTTCTTACTGTATTATTCAGGATTAAGGTCCCATCATAAAAGTTCT
genomic: CTGACCGTGGAATAGAGCTGTTGTCTGCAACCTTCATTTTTAGTGTTATCgtaggtggca ... tgtctttcagGTTACTTTCTTACTGTATTATTCAGGATTAAGGTCCCATCATAAAAGTTCT
EST: gi|88382930|gb|CI683025.1|CI683025
EST:     CTGACCGTGGAATAGAGCTGTTGTCTGCAACCTTCATTTTTAGTGTTATC                         GTTACTTTCTTACTGTATTATTCAGGATTAAGGTCCCATCATAAAAGTTCT
genomic: CTGACCGTGGAATAGAGCTGTTGTCTGCAACCTTCATTTTTAGTGTTATCgtaggtggca ... tgtctttcagGTTACTTTCTTACTGTATTATTCAGGATTAAGGTCCCATCATAAAAGTTCT
EST: gi|88381595|gb|CI682259.1|CI682259
EST:     CTGACCGTGGAATAGAGCTGTTGTCTGCAACCTTCATTTTTAGTGTTATC                         GTTACTTTCTTACTGTATTATTCAGGATTAAGGTCCCATCATAAAAGTTCT
genomic: CTGACCGTGGAATAGAGCTGTTGTCTGCAACCTTCATTTTTAGTGTTATCgtaggtggca ... tgtctttcagGTTACTTTCTTACTGTATTATTCAGGATTAAGGTCCCATCATAAAAGTTCT
EST: gi|95101312|gb|CI693057.1|CI693057
EST:     CTGACCGTGGAATAGAGCTGTTGTCTGCAACCTTCATTTTTAGTGTTATC                         GTTACTTTCTTACTGTATTATTCAGGATTAAGGTCCCATCATAA
genomic: CTGACCGTGGAATAGAGCTGTTGTCTGCAACCTTCATTTTTAGTGTTATCgtaggtggca ... tgtctttcagGTTACTTTCTTACTGTATTATTCAGGATTAAGGTCCCATCATAA
EST: gi|88578322|gb|CI687245.1|CI687245
EST:     CTGACCGTGGAATAGAGCTGTTGTCTGCAACCTTCATTTTTAGTGTTATC                         GTTACTTTCTTACTGTATTATTCAGGATTAAGGTCCCATCATAAAAGTTCT
genomic: CTGACCGTGGAATAGAGCTGTTGTCTGCAACCTTCATTTTTAGTGTTATCgtaggtggca ... tgtctttcagGTTACTTTCTTACTGTATTATTCAGGATTAAGGTCCCATCATAAAAGTTCT
EST: gi|88321685|gb|CI672826.1|CI672826
EST:     CTGACCGTGGAATAGAGCTGTTGTCTGCAACCTTCATTTTTAGTGTTATC                         GTTACTTTCTTACTGTATTATTCAGGATTAAGGTCCCATCCATAACAGTTC
genomic: CTGACCGTGGAATAGAGCTGTTGTCTGCAACCTTCATTTTTAGTGTTATCgtaggtggca ... tgtctttcagGTTACTTTCTTACTGTATTATTCAGGATTAAGGTCCCATC-ATAAAAGTTC
EST: gi|88586843|gb|CI704564.1|CI704564
EST:     CTGACCGTGGAATAGAGCTGTTGTCTGCAACCTTCATTTTTAGTGTTATC                         GTTACTTTCTTACTGTATTATTCAGGATTAAGG
genomic: CTGACCGTGGAATAGAGCTGTTGTCTGCAACCTTCATTTTTAGTGTTATCgtaggtggca ... tgtctttcagGTTACTTTCTTACTGTATTATTCAGGATTAAGG
EST: gi|88392073|gb|CI683901.1|CI683901
EST:     CTGACCGTGGAATAGAGCTGTTGTCTGCAACCTTCATTTTTAGTGTTATC                         GTTACTTTCTTACTGTATTATTCAGGATTAAGGTCCCATCATAAAAGTTCT
genomic: CTGACCGTGGAATAGAGCTGTTGTCTGCAACCTTCATTTTTAGTGTTATCgtaggtggca ... tgtctttcagGTTACTTTCTTACTGTATTATTCAGGATTAAGGTCCCATCATAAAAGTTCT
EST: gi|88592386|gb|CI710488.1|CI710488
EST:     CTGACCGTGGAATAGAGCTGTTGTCTGCAACCTTCATTTTTAGTGTTATC                         GTTACTTTCTTACTGTATTATTCAGGATTAAGGTCCCATCATAAAAGTTCT
genomic: CTGACCGTGGAATAGAGCTGTTGTCTGCAACCTTCATTTTTAGTGTTATCgtaggtggca ... tgtctttcagGTTACTTTCTTACTGTATTATTCAGGATTAAGGTCCCATCATAAAAGTTCT
EST: gi|88581855|gb|CI699069.1|CI699069
EST:     CTGACCGTGGAATAGAGCTGTTGTCTGCAACCTTCATTTTTAGTGTTATC                         GTTACTTTCTTACTGTATTATTCAGGATTAAGGTCCCATCATAAAAGTTCT
genomic: CTGACCGTGGAATAGAGCTGTTGTCTGCAACCTTCATTTTTAGTGTTATCgtaggtggca ... tgtctttcagGTTACTTTCTTACTGTATTATTCAGGATTAAGGTCCCATCATAAAAGTTCT
EST: gi|88338970|gb|CI677787.1|CI677787
EST:     CTGACCGTGGAATAGAGCTGTTGTCTGCAACCTTCATTTTTAGTGTTATC                         GTTACTTTCTTACTGTATTATTCAGGATTAAGGTCCCATCATAAAAGTTCT
genomic: CTGACCGTGGAATAGAGCTGTTGTCTGCAACCTTCATTTTTAGTGTTATCgtaggtggca ... tgtctttcagGTTACTTTCTTACTGTATTATTCAGGATTAAGGTCCCATCATAAAAGTTCT
EST: gi|88588303|gb|CI706111.1|CI706111
EST:     CTGACCGTGGAATAGAGCTGTTGTCTGCAACCTTCATTTTTAGTGTTATC                         GTTACTTTCTTACTGTATTATTCAGGATTAAGGTCCCATCATAAAAGTTCT
genomic: CTGACCGTGGAATAGAGCTGTTGTCTGCAACCTTCATTTTTAGTGTTATCgtaggtggca ... tgtctttcagGTTACTTTCTTACTGTATTATTCAGGATTAAGGTCCCATCATAAAAGTTCT
EST: gi|88467343|gb|CI696721.1|CI696721
EST:     CTGACCGTGGAATAGAGCTGTTGTCTGCAACCTTCATTTTTAGTGTTATC                         GTTACTTTCTTACTGTATTATTCAGGATTAAGGTCCCATCATAAAAGTTC
genomic: CTGACCGTGGAATAGAGCTGTTGTCTGCAACCTTCATTTTTAGTGTTATCgtaggtggca ... tgtctttcagGTTACTTTCTTACTGTATTATTCAGGATTAAGGTCCCATCATAAAAGTTC
EST: gi|88584801|gb|CI702380.1|CI702380
EST:     CTGACCGTGGAATAGAGCTGTTGTCTGCAACCTTCATTTTTAGTGTTATC                         GTTACTTTCTTACTGTATTATTCAGGAT
genomic: CTGACCGTGGAATAGAGCTGTTGTCTGCAACCTTCATTTTTAGTGTTATCgtaggtggca ... tgtctttcagGTTACTTTCTTACTGTATTATTCAGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggtcaaaaatcattttagttcttttcattaactcatttcatgcttgtctttcagGTTACTTTCTTACTGTATTATTCAGGATTAAGGTCCCATCATAAAAGTTCTTCCTTGAAACCGCATGTCAGTGGGAATTTCATACAAGATTG
                          cattaac  putative branch site (score: 2)
                                           cttgtctttc  putative PPT
     aaaaatcattttagtt  TA-rich tract