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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaacacccactttgcttgctggaattctggttaaccataaaaatattacattgcactactctgttggccaatgcagGGCAGAGTGATTCACAACTTCTCATCTGAATGGCATCAAATGAAGGATGCAGTTGAGAACGCTCGGGATGCAGCGATATCTTCTTGTGATGAACTCGAGG

Basic information

species Oryza sativa
transcript LOC_Os01g24470.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g24470.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G061684_T01 (Zea mays), 3'ss of exon 4
gtgaacacccactttgcttgctggaattctggttaaccataaaaatattacattgcactactctgttggccaatgcagGGCAGAGTGATTCACAACTTCTCATCTGAATGGCATCAAATGAAGGATGCAGTTGAGAACGCTCGGGATGCAGCGATATCTTCTTGTGATGAACTCGAGG
|| |  | ||||| |||| ||||| | ||  | || | |    ||| || || || || ||||| ||| |   |  |||| ||||| ||||| | || ||||  ||||||||| ||| | |||||||||||||| || |||||  ||||| ||||| ||||| |||||||||| ||||
gtaagaatccactatgctagctggcactcacgctagcta----aatgttgcactg-acaactctcttgactctt--agGGTAGAGTCATTCATAGCTCCTCAGATGAATGGCAACAAGTCAAGGATGCAGTTGAAAATGCTCGAAATGCATCGATAGCTTCTGGTGATGAACTTGAGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaattctggttaaccataaaaatattacattgcactactctgttggccaatgcagGGCAGAGTGATTCACAACTTCTCATCTGAATGGCATCAAATGAAGGATGCAGTTGAGAACGCTCGGGATGCAGCGATATCTTCTTGTGATGAACTCGAGG
       ggttaac  putative branch site (score: 3)
         ttaaccataaaaatat  TA-rich tract