1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aaaagttcatattttttctttctgtgtgattaattgcttatgtttgcagaaatttcttatctctctttctgagctgacaaatcttgtgctaaatgatcagGCATTTTCAAATTTTCCTGAGAGGCGATCTGCTGCCAAGCATTCGCCACAGGAGAAATTTTCTGTAAACAATGGCTCTGGTTTTGTTGGGTCTAATGTTC
species | Oryza sativa |
transcript | LOC_Os01g22630.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGCTGGCAGATGGCTCCATGATGCCTGTCAAATATCCTCACACTTCACAG GCATTTTCAAATTTTCCTGAGAGGCGATCTGCTGCCAAGCATTCGCCACAGEST: gi|58656710|gb|CK045390.1|CK045390
genomic: AGCTGGCAGATGGCTCCATGATGCCTGTCAAATATCCTCACACTTCACAGgtaggcaaat ... aaatgatcagGCATTTTCAAATTTTCCTGAGAGGCGATCTGCTGCCAAGCATTCGCCACAG
EST: AGCTGGCAGATGGCTCCATGATGCCTGTCAAATATCCTCACACTTCACAG GCATTTTCAAATTTTCCTGAGAGGCGATCTGCTGCCAAGCATTCGCCACAG
genomic: AGCTGGCAGATGGCTCCATGATGCCTGTCAAATATCCTCACACTTCACAGgtaggcaaat ... aaatgatcagGCATTTTCAAATTTTCCTGAGAGGCGATCTGCTGCCAAGCATTCGCCACAG
gcagaaatttcttatctctctttctgagctgacaaatcttgtgctaaatgatcagGCATTTTCAAATTTTCCTGAGAGGCGATCTGCTGCCAAGCATTCGCCACAGGAGAAATTTTCTGTAAACAATGGCTCTGGTTTTGTTGGGTCTAATGTTC
tgctaaa putative branch site (score: 3)
aatttcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaagttcatattttttctttctgtgtgattaattgcttatgtttgcagaaatttcttatctctctttctgagctgacaaatcttgtgctaaatgatcagGCATTTTCAAATTTTCCTGAGAGGCGATCTGCTGCCAAGCATTCGCCACAGGAGAAATTTTCTGTAAACAATGGCTCTGGTTTTGTTGGGTCTAATGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - -ctttctg
- - - - - - - - - - - - tgtgatt
- - - - - - - - - - - - - - - - -ttgctta
- - - - - - - - - - - - - - - - - - - - tgtttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttgtgc