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gtgagataattcattcgatcaattcttattaaagtagtggcctgcctttttcattttctgatgaaatttcttatgtgcagGGTGAGAAAGATTGTACCTACTATGTCAAAACTGGCCATTGCAAATTTGGATCTACATGTAAATTCCATCACCCAGAAATTGGTGGAGTTTCAGAGACAC
species | Oryza sativa |
transcript | LOC_Os01g15350.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCTCTGTGCAAGCAGTCATGTTAAATTCCAGTGGATACCCTCTACGCTCA GGTGAGAAAGATTGTACCTACTATGTCAAAACTGGCCATTGCAAATTTGGAEST: gi|29633146|gb|CB638155.1|CB638155
genomic: GCTCTGTGCAAGCAGTCATGTTAAATTCCAGTGGATACCCTCTACGCTCAgtgagataat ... ttatgtgcagGGTGAGAAAGATTGTACCTACTATGTCAAAACTGGCCATTGCAAATTTGGA
EST: GCTCTGTGCAAGCAGTCATGTTAAATTCCAGTGGATACCCTCTACGCTCA GGTGAGAAAGATTGTACCTACTATGTCAAAACTGGCCATTGCAAATTTGGAEST: gi|58688329|gb|CK077016.1|CK077016
genomic: GCTCTGTGCAAGCAGTCATGTTAAATTCCAGTGGATACCCTCTACGCTCAgtgagataat ... ttatgtgcagGGTGAGAAAGATTGTACCTACTATGTCAAAACTGGCCATTGCAAATTTGGA
EST: GCTCTGTGCAAGCAGTCATGTTAAATTCCAGTGGATACCCTCTACGCTCA GGTGAGAAAGATTGTACCTACTATGTCAAAACTGGCCATTGCAAATTTGGAEST: gi|44667070|gb|CR280504.1|CR280504
genomic: GCTCTGTGCAAGCAGTCATGTTAAATTCCAGTGGATACCCTCTACGCTCAgtgagataat ... ttatgtgcagGGTGAGAAAGATTGTACCTACTATGTCAAAACTGGCCATTGCAAATTTGGA
EST: GCTCTGTGCAAGCAGTCATGTTAAATTCCAGTGGATACCCTCTACGCTCA GGTGAGAAAGATTGTACCTACTATGTCAAAACTGGCCATTGCAAATTTGGAEST: gi|58686022|gb|CK074709.1|CK074709
genomic: GCTCTGTGCAAGCAGTCATGTTAAATTCCAGTGGATACCCTCTACGCTCAgtgagataat ... ttatgtgcagGGTGAGAAAGATTGTACCTACTATGTCAAAACTGGCCATTGCAAATTTGGA
EST: CTCTACGCTCA GGTGAGAAAGA-TGTACCTACTATGTCAAAACTGGCCATTGCAAATTTGGA
genomic: CTCTACGCTCAgtgagataat ... ttatgtgcagGGTGAGAAAGATTGTACCTACTATGTCAAAACTGGCCATTGCAAATTTGGA
ttattaaagtagtggcctgcctttttcattttctgatgaaatttcttatgtgcagGGTGAGAAAGATTGTACCTACTATGTCAAAACTGGCCATTGCAAATTTGGATCTACATGTAAATTCCATCACCCAGAAATTGGTGGAGTTTCAGAGACAC
ttctgat putative branch site (score: 10)
tttcttat putative PPT
atgaaatttcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagataattcattcgatcaattcttattaaagtagtggcctgcctttttcattttctgatgaaatttcttatgtgcagGGTGAGAAAGATTGTACCTACTATGTCAAAACTGGCCATTGCAAATTTGGATCTACATGTAAATTCCATCACCCAGAAATTGGTGGAGTTTCAGAGACAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG