1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...acttctgttttaccttcatgatgatgatgatgatacaccagcgttgtcattgttacctgtgctttccaatcctaaatgcatgaatttatttctatgacagGTGATTGACAAGGTCCAGGAAGAGACTTCAAAGAGCAGATCAG
species | Oryza sativa |
transcript | LOC_Os01g15310.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTCGGGTTCCTGATGAG GTGATTGACAAGGTCCAGGAAGAGACTTCAAAGAGCAGATCAGEST: gi|88214587|gb|CI214436.1|CI214436
genomic: TTCGGGTTCCTGATGAGgtatggattt ... tctatgacagGTGATTGACAAGGTCCAGGAAGAGACTTCAAAGAGCAGATCAG
EST: CACCATCAAGTATCTTCGGGTTCCTGATGAG GTGATTGACAAGGTCCAGGAAGAGACTTCAAAGAGCAGATCAGEST: gi|86504317|gb|CI146950.1|CI146950
genomic: CACCATCAAGTATCTTCGGGTTCCTGATGAGgtatggattt ... tctatgacagGTGATTGACAAGGTCCAGGAAGAGACTTCAAAGAGCAGATCAG
EST: CTTCGGGTTCCTGATGAG GTGATTGACAAGGTCCAGGAAGAGACTTCAAAGAGCAGATCAGEST: gi|88202538|gb|CI200893.1|CI200893
genomic: CTTCGGGTTCCTGATGAGgtatggattt ... tctatgacagGTGATTGACAAGGTCCAGGAAGAGACTTCAAAGAGCAGATCAG
EST: TGGGAACACCATCAAGTATCTTCGGGTTCCTGATGAG GTGATTGACAAGGTCCAGGAAGAGACTTCAAAGAGCAGATCAGEST: gi|88979842|gb|CI026148.1|CI026148
genomic: TGGGAACACCATCAAGTATCTTCGGGTTCCTGATGAGgtatggattt ... tctatgacagGTGATTGACAAGGTCCAGGAAGAGACTTCAAAGAGCAGATCAG
EST: AATGTTACATCCGTGGGAACACCATCAAGTATCTTCGGGTTCCTGATGAG GTGATTGACAAGGTCCAGGAAGAGACTTCAAAGAGCAGATCAGEST: gi|89199230|gb|CI255496.1|CI255496
genomic: AATGTTACATCCGTGGGAACACCATCAAGTATCTTCGGGTTCCTGATGAGgtatggattt ... tctatgacagGTGATTGACAAGGTCCAGGAAGAGACTTCAAAGAGCAGATCAG
EST: AATGTTACATCCGTGGGAACACCATCAAGTATCTTCGGGTTCCTGATGAG GTGATTGACAAGGTCCAGGAAGAGACTTCAAAGAGCAGATCAGEST: gi|88208022|gb|CI207871.1|CI207871
genomic: AATGTTACATCCGTGGGAACACCATCAAGTATCTTCGGGTTCCTGATGAGgtatggattt ... tctatgacagGTGATTGACAAGGTCCAGGAAGAGACTTCAAAGAGCAGATCAG
EST: AATGTTACATCCGTGGGAACACCATCAAGTATCTTCGGGTTCCTGATGAG GTGATTGACAAGGTCCAGGAAGAGACTTCAAAGAGCAGATCAGEST: gi|88241907|gb|CI241756.1|CI241756
genomic: AATGTTACATCCGTGGGAACACCATCAAGTATCTTCGGGTTCCTGATGAGgtatggattt ... tctatgacagGTGATTGACAAGGTCCAGGAAGAGACTTCAAAGAGCAGATCAG
EST: ACCATCAAGTATCTTCGGGTTCCTGATGAG GTGATTGACAAGGTCCAGGAAGAGACTTCAAAGAGCAGATCAGEST: gi|88214580|gb|CI214429.1|CI214429
genomic: ACCATCAAGTATCTTCGGGTTCCTGATGAGgtatggattt ... tctatgacagGTGATTGACAAGGTCCAGGAAGAGACTTCAAAGAGCAGATCAG
EST: AATGTTACATCCGTGGGAACACCATCAAGTATCTTCGGGTTCCTGATGAG GTGATTGACAAGGTCCAGGAAGAGACTTCAAAGAGCAGATCAGEST: gi|89170615|gb|CI039892.1|CI039892
genomic: AATGTTACATCCGTGGGAACACCATCAAGTATCTTCGGGTTCCTGATGAGgtatggattt ... tctatgacagGTGATTGACAAGGTCCAGGAAGAGACTTCAAAGAGCAGATCAG
EST: AATGTTACATCCGTGGGAACACCATCAAGTATCTTCGGGTTCCTGATGAG GTGATTGACAAGGTCCAGGAAGAGACTTCAAAGAGCAGATCAGEST: gi|3761804|gb|C99052.1|C99052
genomic: AATGTTACATCCGTGGGAACACCATCAAGTATCTTCGGGTTCCTGATGAGgtatggattt ... tctatgacagGTGATTGACAAGGTCCAGGAAGAGACTTCAAAGAGCAGATCAG
EST: AATGTTACATCCGTGGGAACACCATCAAGTATCTTCGGGTTCCTGATGAG GTGATTGACAAGGTCCAGGAAGAGACTTCAAAGAGCAGATCAGEST: gi|88241526|gb|CI241375.1|CI241375
genomic: AATGTTACATCCGTGGGAACACCATCAAGTATCTTCGGGTTCCTGATGAGgtatggattt ... tctatgacagGTGATTGACAAGGTCCAGGAAGAGACTTCAAAGAGCAGATCAG
EST: TGGGAACACCATCAAGTATCTTCGGGTTCCTGATGAG GTGATTGACAAGGTCCAGGAAGAGACTTCAAAGAGCAGATCAGEST: gi|87025899|gb|CI282476.1|CI282476
genomic: TGGGAACACCATCAAGTATCTTCGGGTTCCTGATGAGgtatggattt ... tctatgacagGTGATTGACAAGGTCCAGGAAGAGACTTCAAAGAGCAGATCAG
EST: AATGTTACATCCGTGGGAACACCATCAAGTATCTTCGGGTTCCTGATGAG GTGATTGACAAGGTCCAGGAAGAGACTTCAAAGAGCAGATCAGEST: gi|89193834|gb|CI018152.1|CI018152
genomic: AATGTTACATCCGTGGGAACACCATCAAGTATCTTCGGGTTCCTGATGAGgtatggattt ... tctatgacagGTGATTGACAAGGTCCAGGAAGAGACTTCAAAGAGCAGATCAG
EST: AATGTTACATCCGTGGGAACACCATCAAGTATCTTCGGGTTCCTGATGAG GTGATTGACAAGGTCCAGGAAGAGACTTCAAAGAGCAGATCAG
genomic: AATGTTACATCCGTGGGAACACCATCAAGTATCTTCGGGTTCCTGATGAGgtatggattt ... tctatgacagGTGATTGACAAGGTCCAGGAAGAGACTTCAAAGAGCAGATCAG
gtcattgttacctgtgctttccaatcctaaatgcatgaatttatttctatgacagGTGATTGACAAGGTCCAGGAAGAGACTTCAAAGAGCAGATCAG
tcctaaa putative branch site (score: 56)
tttatttct putative PPT
atgaatttatttctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttctgttttaccttcatgatgatgatgatgatacaccagcgttgtcattgttacctgtgctttccaatcctaaatgcatgaatttatttctatgacagGTGATTGACAAGGTCCAGGAAGAGACTTCAAAGAGCAGATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
acttctg
- - - - - - - - catgatg
- - - - - - - - -atgatga
- - - - - - - - - - - - - - - - - -caccagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatga