1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...acattttttcttgaattatcagtttctactcatccaagacaatgcatctaatgtggaaattaccaacaaattgacaaaaaagaaccttgtctttttgtagCCTATCAATTCGACACTCTTGAAGCTGCTCTTTCCAGTTGCGTTGTGCCATGCTCTTGGTCATGTCACTAGCAATGTATCGTTTGCTACTGTTGCAGTTT
species | Oryza sativa |
transcript | LOC_Os01g13770.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCTCGTGAGCTGGACCGTCGGGCTCCCAAAGCGTGCG CCTATCAATTCGACACTCTTGAAGCTGTTCTTTCCAGTTGCGTTGTGTCATEST: gi|29616222|gb|CB621234.1|CB621234
genomic: CCTCGTGAGCTGGACCGTCGGGCTCCCAAAGCGTGCGgtaatttcta ... ctttttgtagCCTATCAATTCGACACTCTTGAAGCTGCTCTTTCCAGTTGCGTTGTGCCAT
EST: GTGTCGTGTACTGCCTCGTGAGCTGGACCGTCGGGCTCCCAAAGCGTGCG CCTATCAATTCGACACTCTTGAAGCTGCTCTTTCCAGTTGCGTTGTGCCATEST: gi|66928470|gb|CX115318.1|CX115318
genomic: GTGTCGTGTACTGCCTCGTGAGCTGGACCGTCGGGCTCCCAAAGCGTGCGgtaatttcta ... ctttttgtagCCTATCAATTCGACACTCTTGAAGCTGCTCTTTCCAGTTGCGTTGTGCCAT
EST: GTGTCGTGTACTGCCTCGTGAGCTGGACCGTCGGGCTCCCAAAGCGTGCG CCTATCAATTCGACACTCTTGAAGCTGCTCTTTCCAGTTGCGTTGTGCCATEST: gi|29643944|gb|CB648951.1|CB648951
genomic: GTGTCGTGTACTGCCTCGTGAGCTGGACCGTCGGGCTCCCAAAGCGTGCGgtaatttcta ... ctttttgtagCCTATCAATTCGACACTCTTGAAGCTGCTCTTTCCAGTTGCGTTGTGCCAT
EST: GTGTCGTGTACTGCCTCGTGAGCTGGACCGTCGGGCTCCCAAAGCGTGCG CCTATCAATTCGACACTCTTGAAGCTGCTCTTTCCAGTTGCGTTGTGCCATEST: gi|25797136|gb|CA753097.1|CA753097
genomic: GTGTCGTGTACTGCCTCGTGAGCTGGACCGTCGGGCTCCCAAAGCGTGCGgtaatttcta ... ctttttgtagCCTATCAATTCGACACTCTTGAAGCTGCTCTTTCCAGTTGCGTTGTGCCAT
EST: GTGTCGTGTACTGCCTCGTGAGCTGGACCGTCGGGCTCCCAAAGCGTGCG CCTATCAATGCGACACTCTTGAAGCTGCTCTTTCCAGTTGCGTGGTGCCATEST: gi|29661884|gb|CB658159.1|CB658159
genomic: GTGTCGTGTACTGCCTCGTGAGCTGGACCGTCGGGCTCCCAAAGCGTGCGgtaatttcta ... ctttttgtagCCTATCAATTCGACACTCTTGAAGCTGCTCTTTCCAGTTGCGTTGTGCCAT
EST: GTGTCGTGTACTGCCTCGTGAGCTGGACCGTCGGGCTCCCAAAGCGTGCG CCTATCAATTCGACACTCTTGAAGCTGCTCTTTCCAGTTGCGTTGTGCCATEST: gi|29657881|gb|CB654156.1|CB654156
genomic: GTGTCGTGTACTGCCTCGTGAGCTGGACCGTCGGGCTCCCAAAGCGTGCGgtaatttcta ... ctttttgtagCCTATCAATTCGACACTCTTGAAGCTGCTCTTTCCAGTTGCGTTGTGCCAT
EST: GTGTCGTGTACTGCCTCGTGAGCTGGACCGTCGGGCTCCCAAAGCGTGCG CCTATCAATTCGACACTCTTGAAGCTGCTCTTTCCAGTTGCGTTGTGCCAT
genomic: GTGTCGTGTACTGCCTCGTGAGCTGGACCGTCGGGCTCCCAAAGCGTGCGgtaatttcta ... ctttttgtagCCTATCAATTCGACACTCTTGAAGCTGCTCTTTCCAGTTGCGTTGTGCCAT
atctaatgtggaaattaccaacaaattgacaaaaaagaaccttgtctttttgtagCCTATCAATTCGACACTCTTGAAGCTGCTCTTTCCAGTTGCGTTGTGCCATGCTCTTGGTCATGTCACTAGCAATGTATCGTTTGCTACTGTTGCAGTTT
aattgac putative branch site (score: 264)
ccttgtctttttgt putative PPT
aaattgacaaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acattttttcttgaattatcagtttctactcatccaagacaatgcatctaatgtggaaattaccaacaaattgacaaaaaagaaccttgtctttttgtagCCTATCAATTCGACACTCTTGAAGCTGCTCTTTCCAGTTGCGTTGTGCCATGCTCTTGGTCATGTCACTAGCAATGTATCGTTTGCTACTGTTGCAGTTT
- - - tttcttg
- - - - - - - - - - - - - - - catccaa
- - - - - - - - - - - - - - - - - - - -caatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaaaaa