1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaagacccatttgttgatcccatttagctctaattccatccctgcctttaccttcctctcataccttttgacttgtgaactcttccctggatgtgttgaagGGTGTAAGATGTAAAAGAATAACAAGATGCATTGGTTCTGTTGGCCTTTATGTCCCAGGTGGCACTGCAGTATTGCCTTCCACTGCATTGATGCTTGCTG
species | Oryza sativa |
transcript | LOC_Os01g13190.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCTTCCACGTTTCGCAAAAGTTGCCTGAAAAGACTGTTGAGAATATGAAA GGTGTAAGATGTAAAAGAATAACAAGATGCATTGGTTCTGTTGGCCTTTATEST: gi|29680232|gb|CB676507.1|CB676507
genomic: CCTTCCACGTTTCGCAAAAGTTGCCTGAAAAGACTGTTGAGAATATGAAAgtaagaccca ... tgtgttgaagGGTGTAAGATGTAAAAGAATAACAAGATGCATTGGTTCTGTTGGCCTTTAT
EST: CCTTCCACGTTTCGCAAAAGTTGCCTGAAAAGACTGTTGAGAATATGAAA GGTGTAAGATGTAAAAGAATAACAAGATGCATTGGTTCTGTTGGCCTTTATEST: gi|88422364|gb|CI689178.1|CI689178
genomic: CCTTCCACGTTTCGCAAAAGTTGCCTGAAAAGACTGTTGAGAATATGAAAgtaagaccca ... tgtgttgaagGGTGTAAGATGTAAAAGAATAACAAGATGCATTGGTTCTGTTGGCCTTTAT
EST: CCTTCCACGTTTCGCAAAAGTTGCCTGAAAAGACTGTTGAGAATATGAAA GGTGTAAGATGTAAAAGAATAACAAGATGCATTGGTTCTGTTGGCCTTTATEST: gi|58678012|gb|CK066699.1|CK066699
genomic: CCTTCCACGTTTCGCAAAAGTTGCCTGAAAAGACTGTTGAGAATATGAAAgtaagaccca ... tgtgttgaagGGTGTAAGATGTAAAAGAATAACAAGATGCATTGGTTCTGTTGGCCTTTAT
EST: CCTTCCACGTTTCGCAAAAGTTGCCTGAAAAGACTGTTGAGAATATGAAA GGTGTAAGATGTAAAAGAATAACAAGATGCATTGGTTCTGTTGGCCTTTATEST: gi|117232645|gb|CT842234.1|CT842234
genomic: CCTTCCACGTTTCGCAAAAGTTGCCTGAAAAGACTGTTGAGAATATGAAAgtaagaccca ... tgtgttgaagGGTGTAAGATGTAAAAGAATAACAAGATGCATTGGTTCTGTTGGCCTTTAT
EST: CCTTCCACGTTTCGCAAAAGTTGCCTGAAAAGACTGTTGAGAATATGAAA GGTGTAAGATGTAAAAGAATAACAAGATGCATTGGTTCTGTTGGCCTTTATEST: gi|58673757|gb|CK062443.1|CK062443
genomic: CCTTCCACGTTTCGCAAAAGTTGCCTGAAAAGACTGTTGAGAATATGAAAgtaagaccca ... tgtgttgaagGGTGTAAGATGTAAAAGAATAACAAGATGCATTGGTTCTGTTGGCCTTTAT
EST: CCTTCCACGTTTCGCAAAAGTTGCCTGAAAAGACTGTTGAGAATATGAAA GGTGTAAGATGTAAAAGAATAACAAGATGCATTGGTTCTGTTGGCCTTTATEST: gi|29683233|gb|CB679508.1|CB679508
genomic: CCTTCCACGTTTCGCAAAAGTTGCCTGAAAAGACTGTTGAGAATATGAAAgtaagaccca ... tgtgttgaagGGTGTAAGATGTAAAAGAATAACAAGATGCATTGGTTCTGTTGGCCTTTAT
EST: CCTTCCACGTTTCGCAAAAGTTGCCTGAAAAGACTGTTGAGAATATGAAA GGTGTAAGATGTAAAAGAATAACAAGATGCATTGGTTCTGTTGGCCTTTATEST: gi|29662201|gb|CB658476.1|CB658476
genomic: CCTTCCACGTTTCGCAAAAGTTGCCTGAAAAGACTGTTGAGAATATGAAAgtaagaccca ... tgtgttgaagGGTGTAAGATGTAAAAGAATAACAAGATGCATTGGTTCTGTTGGCCTTTAT
EST: CCTTCCACGTTTCGCAAAAGTTGCCTGAAAAGACTGTTGAGAATATGAAA GGTGTAAGATGTAAAAGAATAACAAGATGCATTGGTTCTGTTGGCCTTTATEST: gi|88583475|gb|CI700958.1|CI700958
genomic: CCTTCCACGTTTCGCAAAAGTTGCCTGAAAAGACTGTTGAGAATATGAAAgtaagaccca ... tgtgttgaagGGTGTAAGATGTAAAAGAATAACAAGATGCATTGGTTCTGTTGGCCTTTAT
EST: CCTTCCACGTTTCGCAAAAGTTGCCTGAAAAGACTGTTGAGAATATGAAA GGTGTAAGATGTAAAAGAATAACAAGATGCATTGGTTCTGTTGGCCTTTAT
genomic: CCTTCCACGTTTCGCAAAAGTTGCCTGAAAAGACTGTTGAGAATATGAAAgtaagaccca ... tgtgttgaagGGTGTAAGATGTAAAAGAATAACAAGATGCATTGGTTCTGTTGGCCTTTAT
tttaccttcctctcataccttttgacttgtgaactcttccctggatgtgttgaagGGTGTAAGATGTAAAAGAATAACAAGATGCATTGGTTCTGTTGGCCTTTATGTCCCAGGTGGCACTGCAGTATTGCCTTCCACTGCATTGATGCTTGCTG
ttttgac putative branch site (score: 22)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagacccatttgttgatcccatttagctctaattccatccctgcctttaccttcctctcataccttttgacttgtgaactcttccctggatgtgttgaagGGTGTAAGATGTAAAAGAATAACAAGATGCATTGGTTCTGTTGGCCTTTATGTCCCAGGTGGCACTGCAGTATTGCCTTCCACTGCATTGATGCTTGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG