1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaaatgacacttgacaccatcctttcaatgtcagtaagcagctttgctttgatgtgagttgtgccgagctgaacaatttgtataatcgcttactgctctactgcagGTCACACCGAAATTCTGCAAACAATTTGGAAATGTCGGTCATGTCATCAACAAGGCTCTATCGGAGTACAAGCAGGAAGTGGAAACCCGGAGTTTCCCAG
species | Oryza sativa |
transcript | LOC_Os01g12560.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TAGTTTACCATGACTTGTTAGGGATGATGCAACATCCACACCATGCCAAG GTCACACCGAAATTCTGCAAACAATTTGGAAATGTCGGTCATGTCATCAACEST: gi|86494036|gb|CI136669.1|CI136669
genomic: TAGTTTACCATGACTTGTTAGGGATGATGCAACATCCACACCATGCCAAGgtaaatgaca ... tctactgcagGTCACACCGAAATTCTGCAAACAATTTGGAAATGTCGGTCATGTCATCAAC
EST: TAGTTTACCATGACTTGTTAGGGATGATGCAACATCCACACCATGCCAAG GTCACACCGAAATTCTGCAAACAATTTGGAAATGTCGGTCATGTCATCAACEST: gi|88227693|gb|CI227173.1|CI227173
genomic: TAGTTTACCATGACTTGTTAGGGATGATGCAACATCCACACCATGCCAAGgtaaatgaca ... tctactgcagGTCACACCGAAATTCTGCAAACAATTTGGAAATGTCGGTCATGTCATCAAC
EST: TAGTTTACCATGACTTGTTAGGGATGATGCAACATCCACACCATGCCAAG GTCACACCGAAATTCTGCAAACAATTTGGAAATGTCGGTCATGTCATCAACEST: gi|88688488|gb|CI732064.1|CI732064
genomic: TAGTTTACCATGACTTGTTAGGGATGATGCAACATCCACACCATGCCAAGgtaaatgaca ... tctactgcagGTCACACCGAAATTCTGCAAACAATTTGGAAATGTCGGTCATGTCATCAAC
EST: TAGTTTACCATGACTTGTTAGGGATGATGCAACATCCACACCATGCCAAG GTCACACCGAAATTCTGCAAACAATTTGGAAATGTCGGTCATGTCATCAACEST: gi|112786419|gb|EE590727.1|EE590727
genomic: TAGTTTACCATGACTTGTTAGGGATGATGCAACATCCACACCATGCCAAGgtaaatgaca ... tctactgcagGTCACACCGAAATTCTGCAAACAATTTGGAAATGTCGGTCATGTCATCAAC
EST: TAGTTTACCATGACTTGTTAGGGATGATGCAACATCCACACCATGCCAAG GTCACACCGAAATTCTGCAAACAATTTGGAAATGTCGGTCATGTCATCAACEST: gi|88690567|gb|CI734646.1|CI734646
genomic: TAGTTTACCATGACTTGTTAGGGATGATGCAACATCCACACCATGCCAAGgtaaatgaca ... tctactgcagGTCACACCGAAATTCTGCAAACAATTTGGAAATGTCGGTCATGTCATCAAC
EST: TAGTTTACCATGACTTGTTAGGGATGATGCAACATCCACACCATGCCAAG GTCACACCGAAATTCTGCAAACAATTTGGAAATGTCGGTCATGTCATCAACEST: gi|86506127|gb|CI148760.1|CI148760
genomic: TAGTTTACCATGACTTGTTAGGGATGATGCAACATCCACACCATGCCAAGgtaaatgaca ... tctactgcagGTCACACCGAAATTCTGCAAACAATTTGGAAATGTCGGTCATGTCATCAAC
EST: TAGTTTACCATGACTTGTTAGGGATGATGCAACATCCACACCATGCCAAG GTCACACCGAAATTCTGCAAACAATTTGGAAATGTCGGTCATGTCATCAAC
genomic: TAGTTTACCATGACTTGTTAGGGATGATGCAACATCCACACCATGCCAAGgtaaatgaca ... tctactgcagGTCACACCGAAATTCTGCAAACAATTTGGAAATGTCGGTCATGTCATCAAC
atgtgagttgtgccgagctgaacaatttgtataatcgcttactgctctactgcagGTCACACCGAAATTCTGCAAACAATTTGGAAATGTCGGTCATGTCATCAACAAGGCTCTATCGGAGTACAAGCAGGAAGTGGAAACCCGGAGTTTCCCAG
cgcttac putative branch site (score: 3)
ctgctct CT-rich tract
aacaatttgtataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatgacacttgacaccatcctttcaatgtcagtaagcagctttgctttgatgtgagttgtgccgagctgaacaatttgtataatcgcttactgctctactgcagGTCACACCGAAATTCTGCAAACAATTTGGAAATGTCGGTCATGTCATCAACAAGGCTCTATCGGAGTACAAGCAGGAAGTGGAAACCCGGAGTTTCCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA