1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tattcttgcatgtatatggttttgatatataacagcacattctctcttttgagcttttcaaagattattgctgctctgataataaaaatggtcttttcagCTGTTAGAACATTTTAAACCTTCGAAACCATGGGTTCCAGCTATTACACCAAATGGGACCAAGCAAAAGGGACCCGAGGATTTTAATGAATCCGAGCTTG
species | Oryza sativa |
transcript | LOC_Os01g10140.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTTGATGGTGACATCTACTGGGTCTCATTAAACCCAAAG CTGTTAGAACATTTTAAACCTTCGAAACCATGGGTTCCAGCTATTACACCAEST: gi|58670199|gb|CK058885.1|CK058885
genomic: TTTGATGGTGACATCTACTGGGTCTCATTAAACCCAAAGgtatgttaat ... gtcttttcagCTGTTAGAACATTTTAAACCTTCGAAACCATGGGTTCCAGCTATTACACCA
EST: CCAATAGTGATTTTGATGGTGACATCTACTGGGTCTCATTAAACCCAAAG CTGTTAGAACATTTTAAACCTTCGAAAGCATGGGGTTCCAGCTATTACACCEST: gi|58656974|gb|CK045654.1|CK045654
genomic: CCAATAGTGATTTTGATGGTGACATCTACTGGGTCTCATTAAACCCAAAGgtatgttaat ... gtcttttcagCTGTTAGAACATTTTAAACCTTCGAAACCATGGG-TTCCAGCTATTACACC
EST: CCAATAGTGATTTTGATGGTGACATCTACTGGGTCTCATTAAACCCAAAG CTGTTAGAACATTTTAAACCTTCGAAACCATGGGTTCCAGCTATTACACCA
genomic: CCAATAGTGATTTTGATGGTGACATCTACTGGGTCTCATTAAACCCAAAGgtatgttaat ... gtcttttcagCTGTTAGAACATTTTAAACCTTCGAAACCATGGGTTCCAGCTATTACACCA
cttttgagcttttcaaagattattgctgctctgataataaaaatggtcttttcagCTGTTAGAACATTTTAAACCTTCGAAACCATGGGTTCCAGCTATTACACCAAATGGGACCAAGCAAAAGGGACCCGAGGATTTTAATGAATCCGAGCTTG
ctctgat putative branch site (score: 4)
tcttttc putative PPT
ttttcaaagattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattcttgcatgtatatggttttgatatataacagcacattctctcttttgagcttttcaaagattattgctgctctgataataaaaatggtcttttcagCTGTTAGAACATTTTAAACCTTCGAAACCATGGGTTCCAGCTATTACACCAAATGGGACCAAGCAAAAGGGACCCGAGGATTTTAATGAATCCGAGCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT