1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...attaggtaggtgtgtaaggggtagtaaagctttttgattggcaacaggcagtcagttctattttttgttcacagtaagtaatatcatttctttttctcagCAATCGATCAGGAAGGACATTCACATCAAATAATTTAATTGCATTACTTCACTATGGAGGAGTTCCAGAAGAATTCTTTATGGAGCTTCTGCAGACTGCG
species | Oryza sativa |
transcript | LOC_Os01g10140.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGTCTATCTGGGGTTCAGTCCGTGAATTCTTTTGAAATAGTCTCTACAAG CAATCGATCAGGAAGGACATTCACATCAAATAATTTAATTGCATTACTTCAEST: gi|86904952|gb|CI310745.1|CI310745
genomic: AGTCTATCTGGGGTTCAGTCCGTGAATTCTTTTGAAATAGTCTCTACAAGgtatgccaaa ... tttttctcagCAATCGATCAGGAAGGACATTCACATCAAATAATTTAATTGCATTACTTCA
EST: AGTCTATCTGGGGTTCAGTCCGTGAATTCTTTTGAAATAGTCTCTACAAG CAATCGATCAGGAAGGACATTCACATCAAATAATTTAATTGCATTACTTCA
genomic: AGTCTATCTGGGGTTCAGTCCGTGAATTCTTTTGAAATAGTCTCTACAAGgtatgccaaa ... tttttctcagCAATCGATCAGGAAGGACATTCACATCAAATAATTTAATTGCATTACTTCA
aggcagtcagttctattttttgttcacagtaagtaatatcatttctttttctcagCAATCGATCAGGAAGGACATTCACATCAAATAATTTAATTGCATTACTTCACTATGGAGGAGTTCCAGAAGAATTCTTTATGGAGCTTCTGCAGACTGCG
tatcatttctttttct CT-rich tract
taagtaatatcatttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attaggtaggtgtgtaaggggtagtaaagctttttgattggcaacaggcagtcagttctattttttgttcacagtaagtaatatcatttctttttctcagCAATCGATCAGGAAGGACATTCACATCAAATAATTTAATTGCATTACTTCACTATGGAGGAGTTCCAGAAGAATTCTTTATGGAGCTTCTGCAGACTGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - -ttgattg
- - - - - - - - - - - - - - - - - - - - - - caggcag