Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagccactgttccattgccattgccattgccatgcatctagctagcttgggatcgatcgagcagagtggcaggctgagctgacatccatggcgtgcagGTTTGACAGGGACTTGAGGTGGAGGACGGGGGTGAACATCGTGCCGGTGCGGTGCGACAGCGCGAACGGGTTCCAGGTCACGGTCGCCGCGCTCCAGGCG

Basic information

species Oryza sativa
transcript LOC_Os01g09700.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g09700.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G163015_T01 (Zea mays), 3'ss of exon 2
--------------------------gtaagccactgttccattgccattgccattgccatgcatctagc-tagcttgggatcgatcga-gcagagtggcaggctgagctgacatccatggcgtgcagGTTTGACAGGGACTTGAGGTGGAGGACGGGGGTGAACATCGTGCCGGTGCGGTGCGACAGCGCGAACGGGTTCCAGGTCACGGTCGCCGCGCTCCAGGCG
                          | | ||  |            |   ||   || ||||  ||     | |     |  | || |  ||||  | ||| |  | ||||||| |   || ||||| || ||||| ||| || |||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||| ||||||||||||||||
gtaagcggagcgctaagaagcatccagcatgctgcatgcatgcacggacccccggcgctatgctactgttacaccgcaacagtgctctacacagacagacagac-aaactgacatgctctgcttgcagTTTCGACAGAGACCTGCGGTGGAGGACGGGGGTGAACATCGTGCCGGTGCACTGCGACAGCGCCAACGGGTTCCAGGTCACGGCCGCCGCGCTCCAGGCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcttgggatcgatcgagcagagtggcaggctgagctgacatccatggcgtgcagGTTTGACAGGGACTTGAGGTGGAGGACGGGGGTGAACATCGTGCCGGTGCGGTGCGACAGCGCGAACGGGTTCCAGGTCACGGTCGCCGCGCTCCAGGCG
                                 agctgac  putative branch site (score: 3)