1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...catgatgctaatgctgtttgtgtgtaaatggtgctcctaatcagttgttgtgatcattctgtttttgttttattgacttgattctgatgtgcatgtttagGGTGGATACAAGGGTTTCTATTCTAGAAACACCGTCGCACTGACACCGAAATCGGTGAATGACATCCACAAGAGAGGTGGGACTGTTCTTGGAACCTCCA
species | Oryza sativa |
transcript | LOC_Os01g09570.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGTGCGGCTTGTATGATATGTATGGCGTCACCAGCGTCGTTGGCATAGAG GGTGGATACAAGGGTTTCTATTCTAGAAACACCGTCGCACTGACACCGAAAEST: gi|58588190|gb|CF986498.1|CF986498
genomic: TGTGCGGCTTGTATGATATGTATGGCGTCACCAGCGTCGTTGGCATAGAGgtgattaact ... gcatgtttagGGTGGATACAAGGGTTTCTATTCTAGAAACACCGTCGCACTGACACCGAAA
EST: TGTGCGGCTTGTATGATATGTATGGCGTCACCAGCGTCGTTGGCATACAG GGTGGATACAAGGGTTTCTATTCTAGAAACACCGTCGCACTGACACCGAAAEST: gi|33797180|gb|CF324454.1|CF324454
genomic: TGTGCGGCTTGTATGATATGTATGGCGTCACCAGCGTCGTTGGCATAGAGgtgattaact ... gcatgtttagGGTGGATACAAGGGTTTCTATTCTAGAAACACCGTCGCACTGACACCGAAA
EST: TGTGCGGCTTGTATGATATGTATGGCGTCACCAGCGTCGTTGGCATAGAG GGTGGATACAAGGGTTTCTATTCTAGAAACACCGTCGCACTGACACCGAAA
genomic: TGTGCGGCTTGTATGATATGTATGGCGTCACCAGCGTCGTTGGCATAGAGgtgattaact ... gcatgtttagGGTGGATACAAGGGTTTCTATTCTAGAAACACCGTCGCACTGACACCGAAA
tgttgtgatcattctgtttttgttttattgacttgattctgatgtgcatgtttagGGTGGATACAAGGGTTTCTATTCTAGAAACACCGTCGCACTGACACCGAAATCGGTGAATGACATCCACAAGAGAGGTGGGACTGTTCTTGGAACCTCCA
tgtttttgttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catgatgctaatgctgtttgtgtgtaaatggtgctcctaatcagttgttgtgatcattctgtttttgttttattgacttgattctgatgtgcatgtttagGGTGGATACAAGGGTTTCTATTCTAGAAACACCGTCGCACTGACACCGAAATCGGTGAATGACATCCACAAGAGAGGTGGGACTGTTCTTGGAACCTCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- tgatgct
- - - - - -tgctgtt
- - - - - - - - - - - - - - - gtgctcc
- - - - - - - - - - - - - - - - - - - - - - ttgttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgatgt