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...ctagccgttctctaaacctgactttgcagcaagttttggtgatgctctttttgtatgatttattactgtaatgatttgatttgcattctaatgaattcagGAGGGTGGCAAAATCAATTGCAAGGATTATTGCCCTTGCTCTAAACCTAGAAGAGGACTTCTTTGATAAACCAGAAATGCTTGGCGAGCCCATAGCCACA
species | Oryza sativa |
transcript | LOC_Os01g09300.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTATTGCCAAGATGGAGGAAGGTGATGGAACAGTATCATAGCGAGGCCCT GAGGGTGGCAAAATCAATTGCAAGGATTATTGCCCTTGCTCTAAACCTAGAEST: gi|300215975|gb|HO088601.1|HO088601
genomic: GTATTGCCAAGATGGAGGAAGGTGATGGAACAGTATCATAGCGAGGCCCTgtaagttttg ... atgaattcagGAGGGTGGCAAAATCAATTGCAAGGATTATTGCCCTTGCTCTAAACCTAGA
EST: GTATTGCCAAGATGGAGGAAGGTGATGGAGCAGTATCATAGCGAGGCCCT GAGGGTGGCAAAATCAATTGCAAGGATTATTGCCCTTGCTCTAAACCTAGAEST: gi|58597848|gb|CK008376.1|CK008376
genomic: GTATTGCCAAGATGGAGGAAGGTGATGGAACAGTATCATAGCGAGGCCCTgtaagttttg ... atgaattcagGAGGGTGGCAAAATCAATTGCAAGGATTATTGCCCTTGCTCTAAACCTAGA
EST: GTATTGCCAAGATGGAGGAAGGTGATGGAGCAGTATCATAGCGAGGCCCT GAGGGTGGCAAAATCAATTGCAAGGATTATTGCCCTTGCTCTAAACCTAGAEST: gi|38473536|gb|CF957668.1|CF957668
genomic: GTATTGCCAAGATGGAGGAAGGTGATGGAACAGTATCATAGCGAGGCCCTgtaagttttg ... atgaattcagGAGGGTGGCAAAATCAATTGCAAGGATTATTGCCCTTGCTCTAAACCTAGA
EST: GAGG-AGGTGATGGAGCAGTATCATAGCGAGGCCCT GAGGGTGGCAAAATCAATTGCAAGGATTATTGCCCTTGCTCTAAACCTAGAEST: gi|29674320|gb|CB670595.1|CB670595
genomic: GAGGAAGGTGATGGAACAGTATCATAGCGAGGCCCTgtaagttttg ... atgaattcagGAGGGTGGCAAAATCAATTGCAAGGATTATTGCCCTTGCTCTAAACCTAGA
EST: GTATTGCCAAGATGGAGGAATGTGATGGAACAGTATCATAGCGAGGCCCT GAGGGTGGCAAAATCAATTGCAAGGATTATTGCCCTTGCTCTAAACCTATA
genomic: GTATTGCCAAGATGGAGGAAGGTGATGGAACAGTATCATAGCGAGGCCCTgtaagttttg ... atgaattcagGAGGGTGGCAAAATCAATTGCAAGGATTATTGCCCTTGCTCTAAACCTAGA
tctttttgtatgatttattactgtaatgatttgatttgcattctaatgaattcagGAGGGTGGCAAAATCAATTGCAAGGATTATTGCCCTTGCTCTAAACCTAGAAGAGGACTTCTTTGATAAACCAGAAATGCTTGGCGAGCCCATAGCCACA
ttctaat putative branch site (score: 2)
ttgtatgatttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctagccgttctctaaacctgactttgcagcaagttttggtgatgctctttttgtatgatttattactgtaatgatttgatttgcattctaatgaattcagGAGGGTGGCAAAATCAATTGCAAGGATTATTGCCCTTGCTCTAAACCTAGAAGAGGACTTCTTTGATAAACCAGAAATGCTTGGCGAGCCCATAGCCACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA