1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttcatctcctctgtcctgttctctgtatgatacattttatgcatcttgacaggaaggtaaatattggtgattaaccttataaaaattgcatttttaacagGAGATTCAAAGCCCCTTCCTGGAGACGATGGATACGCATGGCTGGAGGAGTGTGAACCACCAGACAATTTTCATCTTGTCGGGTCAACTTATATGGGTCC
species | Oryza sativa |
transcript | LOC_Os01g09030.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGGAGGCACTGCCAGCACTACAACGTCTCTTCCTCTGCACCTTCTGCTG GAGATTCAAAGCCCCTTCCTGGAGACGATGGATACGCATGGCTGGAGGAGTEST: gi|1631627|gb|C19356.1|C19356
genomic: TGGGAGGCACTGCCAGCACTACAACGTCTCTTCCTCTGCACCTTCTGCTGgtactatttg ... tttttaacagGAGATTCAAAGCCCCTTCCTGGAGACGATGGATACGCATGGCTGGAGGAGT
EST: TGGGAGGCACTGCCAGCACTACAACGTCTCTTCCTCTGCACCTTCTGCTG GAGATTCAAAGCCCCTTCCTGGAGACGATGGATACGCATGGCTGGAGGAGTEST: gi|9494076|gb|D24451.2|D24451
genomic: TGGGAGGCACTGCCAGCACTACAACGTCTCTTCCTCTGCACCTTCTGCTGgtactatttg ... tttttaacagGAGATTCAAAGCCCCTTCCTGGAGACGATGGATACGCATGGCTGGAGGAGT
EST: GGGAGGCACTGCCAGCACTACAACGTCTCTTCCTCTGGCACCTTCTGCTG GAGATTCAAAGCCCCTTCCTGGAGACGATGGGATACGCATGGGCTGGAGGA
genomic: GGGAGGCACTGCCAGCACTACAACGTCTCTTCCTCTG-CACCTTCTGCTGgtactatttg ... tttttaacagGAGATTCAAAGCCCCTTCCTGGAGACGATGG-ATACGCATGG-CTGGAGGA
ttgacaggaaggtaaatattggtgattaaccttataaaaattgcatttttaacagGAGATTCAAAGCCCCTTCCTGGAGACGATGGATACGCATGGCTGGAGGAGTGTGAACCACCAGACAATTTTCATCTTGTCGGGTCAACTTATATGGGTCC
gattaac putative branch site (score: 17)
cattttt putative PPT
attaaccttataaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcatctcctctgtcctgttctctgtatgatacattttatgcatcttgacaggaaggtaaatattggtgattaaccttataaaaattgcatttttaacagGAGATTCAAAGCCCCTTCCTGGAGACGATGGATACGCATGGCTGGAGGAGTGTGAACCACCAGACAATTTTCATCTTGTCGGGTCAACTTATATGGGTCC
- catctcc
- - - - - -tgtcctg
- - - - - - - - - - - ctgtatg
- - - - - - - - - - - - - - - - - - ttatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataaaaa