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gtgagtgataatgcaggctgttttttttttgtagttcttttcctaaatgattttcgttgaaataaatctgagagtatttctattggtctggtgcagATGTTGGAGGAGGAGGAAGTGGAAGTTCCAGTAGCAGCTACAACTGAGCCTCCGAAAGATTCTGCCAAGATGGAGACAGATGATGCACCTAATGAAGCTG
species | Oryza sativa |
transcript | LOC_Os01g08560.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGAAAGTCCGCCTTAACATCCATGGGGTGGTCACAGTTGAATCAGCAACA ATGTTGGAGGAGGAGGAAGTGGAAGTTCCAGTAGCAGCTACAACTGAGCCTEST: gi|29619080|gb|CB624092.1|CB624092
genomic: TGAAAGTCCGCCTTAACATCCATGGGGTGGTCACAGTTGAATCAGCAACAgtgagtgata ... tctggtgcagATGTTGGAGGAGGAGGAAGTGGAAGTTCCAGTAGCAGCTACAACTGAGCCT
EST: TGAAAGTCCGCCTTAACATCCATGGGGTGGTCACAGTTGAATCAGCAACA ATGTTGGAGGAGGAGGAAGTGGAAGTTCCAGTAGCAGCTACAACTGAGCCTEST: gi|58611243|gb|CK038955.1|CK038955
genomic: TGAAAGTCCGCCTTAACATCCATGGGGTGGTCACAGTTGAATCAGCAACAgtgagtgata ... tctggtgcagATGTTGGAGGAGGAGGAAGTGGAAGTTCCAGTAGCAGCTACAACTGAGCCT
EST: TGAAAGTCCGCCTTAACATCCATGGGGTGGTCACAGTTAAATCAGCAACA ATGTTGGAGGAGGAGGAAGTGGAAGTTCCAGTAGCAGCTACAACTGAGCCTEST: gi|58695736|gb|CK084423.1|CK084423
genomic: TGAAAGTCCGCCTTAACATCCATGGGGTGGTCACAGTTGAATCAGCAACAgtgagtgata ... tctggtgcagATGTTGGAGGAGGAGGAAGTGGAAGTTCCAGTAGCAGCTACAACTGAGCCT
EST: TGAAAGTCCGCCTTAACATCCATGGGGTGGTCACAGTTGAATCAGCAACA ATGTTGGAGGAGGAGGAAGTGGAAGTTCCAGTAGCAGCTACAACTGAGCCT
genomic: TGAAAGTCCGCCTTAACATCCATGGGGTGGTCACAGTTGAATCAGCAACAgtgagtgata ... tctggtgcagATGTTGGAGGAGGAGGAAGTGGAAGTTCCAGTAGCAGCTACAACTGAGCCT
cctaaatgattttcgttgaaataaatctgagagtatttctattggtctggtgcagATGTTGGAGGAGGAGGAAGTGGAAGTTCCAGTAGCAGCTACAACTGAGCCTCCGAAAGATTCTGCCAAGATGGAGACAGATGATGCACCTAATGAAGCTG
tcctaaa putative branch site (score: 42)
ttgaaataaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgataatgcaggctgttttttttttgtagttcttttcctaaatgattttcgttgaaataaatctgagagtatttctattggtctggtgcagATGTTGGAGGAGGAGGAAGTGGAAGTTCCAGTAGCAGCTACAACTGAGCCTCCGAAAGATTCTGCCAAGATGGAGACAGATGATGCACCTAATGAAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG