1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtacatgtttgcttagttgttttaaattcacctgcctacgcaagagctgtttttactctcttttgtacctgcgtcctcagccgtcttgttctaatcggtttgttctctcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGGATTGAAAGAAAGTGGAAGCTTTGCCCCGCCGATGTTCGCCCACGTGTG
species | Oryza sativa |
transcript | LOC_Os01g08320.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|87026433|gb|CI252387.1|CI252387
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|88221142|gb|CI221098.1|CI221098
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|88215704|gb|CI215553.1|CI215553
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|86526065|gb|CI166271.1|CI166271
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|88242594|gb|CI242443.1|CI242443
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|94362956|gb|CI053117.1|CI053117
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|86542731|gb|CI182937.1|CI182937
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|86529312|gb|CI169518.1|CI169518
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|86417085|gb|CI031294.1|CI031294
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|86417843|gb|CI032052.1|CI032052
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|22307664|gb|BQ908886.1|BQ908886
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|88476493|gb|CI413764.1|CI413764
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|86594182|gb|CI262410.1|CI262410
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|86542617|gb|CI182823.1|CI182823
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGGCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|88847243|gb|CI011186.1|CI011186
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|87031528|gb|CI263901.1|CI263901
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|87031440|gb|CI261814.1|CI261814
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACCTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|88202671|gb|CI201026.1|CI201026
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|88955604|gb|CI091893.1|CI091893
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|88207580|gb|CI207429.1|CI207429
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|88850081|gb|CI091376.1|CI091376
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|86531401|gb|CI171607.1|CI171607
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|88849381|gb|CI089289.1|CI089289
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|86525599|gb|CI165805.1|CI165805
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|8251151|gb|AU091289.1|AU091289
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCG-CTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|86512640|gb|CI155273.1|CI155273
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|15849694|gb|BI797970.1|BI797970
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGCTTEST: gi|89170448|gb|CI039725.1|CI039725
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGG-TT
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|88438874|gb|CI546356.1|CI546356
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: TGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|88845667|gb|CI008664.1|CI008664
genomic: TGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|88205398|gb|CI204784.1|CI204784
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|88242921|gb|CI240772.1|CI240772
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCTGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|86526139|gb|CI166345.1|CI166345
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|88966146|gb|CI013022.1|CI013022
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|88257775|gb|CI360361.1|CI360361
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|86424642|gb|CI063403.1|CI063403
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|88237189|gb|CI237038.1|CI237038
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|86593437|gb|CI264316.1|CI264316
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|87033857|gb|CI188481.1|CI188481
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|87014717|gb|CI269424.1|CI269424
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|88244233|gb|CI243355.1|CI243355
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|86252743|gb|CI010225.1|CI010225
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|86493004|gb|CI135637.1|CI135637
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|88965378|gb|CI011629.1|CI011629
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|15008690|gb|AU223078.1|AU223078
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTNGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|86522134|gb|CI162340.1|CI162340
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCCCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|87013760|gb|CI269259.1|CI269259
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|88431809|gb|CI557466.1|CI557466
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: CAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|87014558|gb|CI284070.1|CI284070
genomic: CAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|87032648|gb|CI266288.1|CI266288
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|29685212|gb|CB681487.1|CB681487
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|87032450|gb|CI264231.1|CI264231
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|86527896|gb|CI168102.1|CI168102
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|88450816|gb|CI549902.1|CI549902
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: CTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|86526790|gb|CI166996.1|CI166996
genomic: CTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|89176809|gb|CI013382.1|CI013382
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGTTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|87013252|gb|CI265350.1|CI265350
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|88975839|gb|CI024090.1|CI024090
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|88830384|gb|CI010584.1|CI010584
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: TCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|86823312|gb|CI256318.1|CI256318
genomic: TCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|86824408|gb|CI262940.1|CI262940
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|88242343|gb|CI242192.1|CI242192
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|88205307|gb|CI204693.1|CI204693
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|86512596|gb|CI155229.1|CI155229
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|86542494|gb|CI182700.1|CI182700
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|88836932|gb|CI008368.1|CI008368
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|88517949|gb|CI445603.1|CI445603
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCCCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|89170540|gb|CI039817.1|CI039817
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: CTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|86507819|gb|CI150452.1|CI150452
genomic: CTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGEST: gi|87020583|gb|CI263446.1|CI263446
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
ttgtacctgcgtcctcagccgtcttgttctaatcggtttgttctctcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGGATTGAAAGAAAGTGGAAGCTTTGCCCCGCCGATGTTCGCCCACGTGTG
ttctaat putative branch site (score: 2)
tttgttctctcccttg putative PPT
ttctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatgtttgcttagttgttttaaattcacctgcctacgcaagagctgtttttactctcttttgtacctgcgtcctcagccgtcttgttctaatcggtttgttctctcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTGGATTGAAAGAAAGTGGAAGCTTTGCCCCGCCGATGTTCGCCCACGTGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG