1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...tcctaaagcaaccttcctatcaagggcatgtgctgctgaagttactgttgttttatatttaaatatacctattcatacaagcttttctgtgacagctcagACGTTTTCTCATACCCAGAAGATGATAGCGTTGAAGATCCACTATTAGCGCAGCATTTGTCACATTTTGGTATTGATTTTTCTTCACTCCAAAAG
species | Oryza sativa |
transcript | LOC_Os01g08200.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCCTCTTGCGGTAAAGCTTGGAACAATTACTGCTGATTTAGAAGCAGCAG ACGTTTTCTCATACCCAGAAGATGATAGCGTTGAAG-TCCACTATTAGCGCEST: gi|33678119|gb|CF306358.1|CF306358
genomic: TCCTCTTGCGGTAAAGCTTGGAACAATTACTGCTGATTTAGAAGCAGCAGgtaatgctac ... gacagctcagACGTTTTCTCATACCCAGAAGATGATAGCGTTGAAGATCCACTATTAGCGC
EST: TCCTCTTGCGGTAAAGCTTGGAACAATTACTGCTGATTTAGAAGCAGCAG ACGTTTTCTCATACCCAGAEST: gi|33677994|gb|CF306233.1|CF306233
genomic: TCCTCTTGCGGTAAAGCTTGGAACAATTACTGCTGATTTAGAAGCAGCAGgtaatgctac ... gacagctcagACGTTTTCTCATACCCAGA
EST: TCCTCTTGCGGTAAAGCTTGGAACAATTACTGCTGATTTAGAAGCAGCAG CEST: gi|33677994|gb|CF306233.1|CF306233
genomic: TCCTCTTGCGGTAAAGCTTGGAACAATTACTGCTGATTTAGAAGCAGCAGgtaatgctac ... gacagctcag-
EST: TCCTCTTGCGGTAAAGCTTGGAACAATTACTGCTGATTTAGAAGCAGCAG CEST: gi|33677994|gb|CF306233.1|CF306233
genomic: TCCTCTTGCGGTAAAGCTTGGAACAATTACTGCTGATTTAGAAGCAGCAGgtaatgctac ... gacagctcag-
EST: TCCTCTTGCGGTAAAGCTTGGAACAATTACTGCTGATTTAGAAGCAGCAG CEST: gi|33677994|gb|CF306233.1|CF306233
genomic: TCCTCTTGCGGTAAAGCTTGGAACAATTACTGCTGATTTAGAAGCAGCAGgtaatgctac ... gacagctcag-
EST: TCCTCTTGCGGTAAAGCTTGGAACAATTACTGCTGATTTAGAAGCAGCAG CEST: gi|58663886|gb|CK052572.1|CK052572
genomic: TCCTCTTGCGGTAAAGCTTGGAACAATTACTGCTGATTTAGAAGCAGCAGgtaatgctac ... gacagctcag-
EST: TCCTCTTGCGGTAAAGCTTGGAACAATTACTGCTGATTTGGAAGCAGCAG CEST: gi|58663886|gb|CK052572.1|CK052572
genomic: TCCTCTTGCGGTAAAGCTTGGAACAATTACTGCTGATTTAGAAGCAGCAGgtaatgctac ... gacagctcag-
EST: TCCTCTTGCGGTAAAGCTTGGAACAATTACTGCTGATTTGGAAGCAGCAG CEST: gi|58663886|gb|CK052572.1|CK052572
genomic: TCCTCTTGCGGTAAAGCTTGGAACAATTACTGCTGATTTAGAAGCAGCAGgtaatgctac ... gacagctcag-
EST: TCCTCTTGCGGTAAAGCTTGGAACAATTACTGCTGATTTGGAAGCAGCAG CEST: gi|58663886|gb|CK052572.1|CK052572
genomic: TCCTCTTGCGGTAAAGCTTGGAACAATTACTGCTGATTTAGAAGCAGCAGgtaatgctac ... gacagctcag-
EST: TCCTCTTGCGGTAAAGCTTGGAACAATTACTGCTGATTTGGAAGCAGCAG CEST: gi|29622184|gb|CB627195.1|CB627195
genomic: TCCTCTTGCGGTAAAGCTTGGAACAATTACTGCTGATTTAGAAGCAGCAGgtaatgctac ... gacagctcag-
EST: TCCTCTTGCGGTAAAGCTTGGAACAATTACTGCTGATTTGGAAGCAGCAG ACGTTTTCTCATACCCAGAAGATGATAGCGTTGAAGATCCACTATTATCGCEST: gi|58693785|gb|CK082472.1|CK082472
genomic: TCCTCTTGCGGTAAAGCTTGGAACAATTACTGCTGATTTAGAAGCAGCAGgtaatgctac ... gacagctcagACGTTTTCTCATACCCAGAAGATGATAGCGTTGAAGATCCACTATTAGCGC
EST: TCCTCTTGCGGTAAAGCTTGGAACAATTACTGCTGATTTGGAAGCAGCAG ACGTTTTCTCATACCCAGAAGATGATAGCGTTGAAGATCCACTATTAGCGCEST: gi|33674839|gb|CF303078.1|CF303078
genomic: TCCTCTTGCGGTAAAGCTTGGAACAATTACTGCTGATTTAGAAGCAGCAGgtaatgctac ... gacagctcagACGTTTTCTCATACCCAGAAGATGATAGCGTTGAAGATCCACTATTAGCGC
EST: TCCTCTTGCGGTAAAGCTTGGAACAATTACTGCTGATTTAGAAGCAGCAG ACGTTTTCTCATACCCAGAAGATGATAGCGTTGAAGATCCACTATTAGCGCEST: gi|88388330|gb|CI627869.1|CI627869
genomic: TCCTCTTGCGGTAAAGCTTGGAACAATTACTGCTGATTTAGAAGCAGCAGgtaatgctac ... gacagctcagACGTTTTCTCATACCCAGAAGATGATAGCGTTGAAGATCCACTATTAGCGC
EST: CCTCTTGCGGTAAAGCCTTGGAACAATTAATGCTGATTTACAAGCAGCAG ACGTTTTCTCATACCCAGAAGATGATAGCGTTGAAGATCCACTATTAGCGCEST: gi|700889|gb|D47180.1|D47180
genomic: CCTCTTGCGGTAAAGC-TTGGAACAATTACTGCTGATTTAGAAGCAGCAGgtaatgctac ... gacagctcagACGTTTTCTCATACCCAGAAGATGATAGCGTTGAAGATCCACTATTAGCGC
EST: TCCTCTTGCGGTAAAGCTTGGAACAATTACTGCTGATTTAGAAGCAGCAG ACGTTTTCTCATACCCAGAAGATGATAGCGTTGAAGATCCACTATTAGCG-
genomic: TCCTCTTGCGGTAAAGCTTGGAACAATTACTGCTGATTTAGAAGCAGCAGgtaatgctac ... gacagctcagACGTTTTCTCATACCCAGAAGATGATAGCGTTGAAGATCCACTATTAGCGC
tgttgttttatatttaaatatacctattcatacaagcttttctgtgacagctcagACGTTTTCTCATACCCAGAAGATGATAGCGTTGAAGATCCACTATTAGCGCAGCATTTGTCACATTTTGGTATTGATTTTTCTTCACTCCAAAAG
ttttatatttaaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcctaaagcaaccttcctatcaagggcatgtgctgctgaagttactgttgttttatatttaaatatacctattcatacaagcttttctgtgacagctcagACGTTTTCTCATACCCAGAAGATGATAGCGTTGAAGATCCACTATTAGCGCAGCATTTGTCACATTTTGGTATTGATTTTTCTTCACTCCAAAAG
- - aaagcaa
- - - - - -ccttcct
- - - - - - - - - - - -gggcatg
- - - - - - - - - - - - - - - tgctgct
- - - - - - - - - - - - - - - - - - - - - - ctgttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catacaa