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gtaacaactgaatctgaatactatcacgttagcttttcagaaaaaaagttaatgctctcctgatttgcctactgttgacagGGTCTGCATCTGGACTGCGCTCATGTTGTTTCTTCTGGCAATGTTCAATGCTTCTAATGTTATTAGCAGGTTTACAAGGGTTGCAGGAGAACTTTTTGGG
species | Oryza sativa |
transcript | LOC_Os01g08020.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGAACCAGCAAGCTCTGGGGGAACGACTGTATTTAGCATGGGCTGGATG GGTCTGCATCTGGACTGCGATCATGTTGTTTCTTCTGGCAATGTTCAATGCEST: gi|58670461|gb|CK059147.1|CK059147
genomic: AAGAACCAGCAAGCTCTGGGGGAACGACTGTATTTAGCATGGGCTGGATGgtaacaactg ... ctgttgacagGGTCTGCATCTGGACTGCGCTCATGTTGTTTCTTCTGGCAATGTTCAATGC
EST: AAGAACCAGCAAGCTCTGGGGGAACGACTGTATTTAGCATGGGCTGGATG GGTCTGCATCTGGACTGCGATCATGTTGTTTCTTCTGGCAATGTTCAATGCEST: gi|29617261|gb|CB622273.1|CB622273
genomic: AAGAACCAGCAAGCTCTGGGGGAACGACTGTATTTAGCATGGGCTGGATGgtaacaactg ... ctgttgacagGGTCTGCATCTGGACTGCGCTCATGTTGTTTCTTCTGGCAATGTTCAATGC
EST: AAGAACCAGCAAGCTCTGGGGGAACGACTGTATTTAGCATGGGCTGGATG GGTCTGCATCTGGACTGCGATCATGTTGTTTCTTCTGGCAATGTTCAATGC
genomic: AAGAACCAGCAAGCTCTGGGGGAACGACTGTATTTAGCATGGGCTGGATGgtaacaactg ... ctgttgacagGGTCTGCATCTGGACTGCGCTCATGTTGTTTCTTCTGGCAATGTTCAATGC
cgttagcttttcagaaaaaaagttaatgctctcctgatttgcctactgttgacagGGTCTGCATCTGGACTGCGCTCATGTTGTTTCTTCTGGCAATGTTCAATGCTTCTAATGTTATTAGCAGGTTTACAAGGGTTGCAGGAGAACTTTTTGGG
tcctgat putative branch site (score: 78)
agaaaaaaagttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacaactgaatctgaatactatcacgttagcttttcagaaaaaaagttaatgctctcctgatttgcctactgttgacagGGTCTGCATCTGGACTGCGCTCATGTTGTTTCTTCTGGCAATGTTCAATGCTTCTAATGTTATTAGCAGGTTTACAAGGGTTGCAGGAGAACTTTTTGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA