1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tatttttccttacactttctgctattctgtacgttgttactattgttcatatatactgtagccttatctaactctccctgaaccttttttttttttgcagAAATGGACAAGCAAGTGAAGGAAATGCTGCAGCTTATTGAGGAGGATGGCGATTCCTTCGCGAAGAAAGCGCAGATGTACTACCAGAGGCGTCCAATGCT
species | Oryza sativa |
transcript | LOC_Os01g07360.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAGTCACATTAGCCCTAAGAACTCTAAATGGCTTGCAGAAAATCTTGAAG AAATGGACAAGCAAGTGAAGGAAATGCTGCAGCTTATTGAGGAGGATGGCGEST: gi|88363375|gb|CI643233.1|CI643233
genomic: CAGTCACATTAGCCCTAAGAACTCTAAATGGCTTGCAGAAAATCTTGAAGgtgagctgaa ... ttttttgcagAAATGGACAAGCAAGTGAAGGAAATGCTGCAGCTTATTGAGGAGGATGGCG
EST: CAGTCACATTAGCCCTAAGAACTCTAAATGGCTTGCAGAAAATCTTGAAG AAATGGACAAGCAAGTGAAGGAAATGCTGCAGCTTATTGAGGAGGATGGCGEST: gi|33677737|gb|CF305976.1|CF305976
genomic: CAGTCACATTAGCCCTAAGAACTCTAAATGGCTTGCAGAAAATCTTGAAGgtgagctgaa ... ttttttgcagAAATGGACAAGCAAGTGAAGGAAATGCTGCAGCTTATTGAGGAGGATGGCG
EST: CAGTCACATTAGCCCTAAGAACCCT-AATGGCTTGCAGAAAATCTTGAAG AAATGGACAAGCAAGTGAATGATATGCTGCAGCTTATTGAGGAGGATGGCGEST: gi|88324875|gb|CI644884.1|CI644884
genomic: CAGTCACATTAGCCCTAAGAACTCTAAATGGCTTGCAGAAAATCTTGAAGgtgagctgaa ... ttttttgcagAAATGGACAAGCAAGTGAAGGAAATGCTGCAGCTTATTGAGGAGGATGGCG
EST: CAGTCACATTAGCCCTAAGAACTCTAAATGGCTTGCAGAAAATCTTGAAG AAATGGACAAGCAAGTGAAGGAAATGCTGCAGCTTATTGAGGAGGATGGCGEST: gi|58671469|gb|CK060155.1|CK060155
genomic: CAGTCACATTAGCCCTAAGAACTCTAAATGGCTTGCAGAAAATCTTGAAGgtgagctgaa ... ttttttgcagAAATGGACAAGCAAGTGAAGGAAATGCTGCAGCTTATTGAGGAGGATGGCG
EST: TAGTCACATTAGCCCTAAGAACTCTAAATGGCTTGCAGAAAATCTTGAAG AAATGGACAAGCAAGTGAAGGAAATGCTGCAGCTTATTGAGGAGGATGGCGEST: gi|88324856|gb|CI644864.1|CI644864
genomic: CAGTCACATTAGCCCTAAGAACTCTAAATGGCTTGCAGAAAATCTTGAAGgtgagctgaa ... ttttttgcagAAATGGACAAGCAAGTGAAGGAAATGCTGCAGCTTATTGAGGAGGATGGCG
EST: CAGTCACATTAGCCCTAAGAACTCTAAATGGCTTGCAGAAAATCTTGAAG AAATGGACAAGCAAGTGAAGGAAATGCTGCAGCTTATTGAGGAGGATGGEST: gi|88376912|gb|CI639237.1|CI639237
genomic: CAGTCACATTAGCCCTAAGAACTCTAAATGGCTTGCAGAAAATCTTGAAGgtgagctgaa ... ttttttgcagAAATGGACAAGCAAGTGAAGGAAATGCTGCAGCTTATTGAGGAGGATGG
EST: CAGTCACATTAGCCCTAAGAACTCTAAATGGCTTGCAGAAAATCTTGAAG AAATGGACAAGCAAGTGAAGGAAATGCTGCAGCTTATTGAGGAGGATGGCGEST: gi|33797289|gb|CF324507.1|CF324507
genomic: CAGTCACATTAGCCCTAAGAACTCTAAATGGCTTGCAGAAAATCTTGAAGgtgagctgaa ... ttttttgcagAAATGGACAAGCAAGTGAAGGAAATGCTGCAGCTTATTGAGGAGGATGGCG
EST: CAGTCACATTAGCCCTAAGAACTCTAAATGGCTTGCAGAAAATCTTGAAG AAATGGACAAGCAAGTGAAGGAAATGCTGCAGCTTATTGAGGAGGATGGCGEST: gi|88381557|gb|CI682215.1|CI682215
genomic: CAGTCACATTAGCCCTAAGAACTCTAAATGGCTTGCAGAAAATCTTGAAGgtgagctgaa ... ttttttgcagAAATGGACAAGCAAGTGAAGGAAATGCTGCAGCTTATTGAGGAGGATGGCG
EST: CAGTCACATTAGCCCTAAGAACTCTAAATGGCTTGCAGAAAATCTTGAAG AAATGGACAAGCAAGTGAAGGAAATGCTGCAGCTTATTGAGGAGGATGGCG
genomic: CAGTCACATTAGCCCTAAGAACTCTAAATGGCTTGCAGAAAATCTTGAAGgtgagctgaa ... ttttttgcagAAATGGACAAGCAAGTGAAGGAAATGCTGCAGCTTATTGAGGAGGATGGCG
ttcatatatactgtagccttatctaactctccctgaaccttttttttttttgcagAAATGGACAAGCAAGTGAAGGAAATGCTGCAGCTTATTGAGGAGGATGGCGATTCCTTCGCGAAGAAAGCGCAGATGTACTACCAGAGGCGTCCAATGCT
atctaac putative branch site (score: 2)
ctctccctgaaccttt CT-rich tract
aacctttttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatttttccttacactttctgctattctgtacgttgttactattgttcatatatactgtagccttatctaactctccctgaaccttttttttttttgcagAAATGGACAAGCAAGTGAAGGAAATGCTGCAGCTTATTGAGGAGGATGGCGATTCCTTCGCGAAGAAAGCGCAGATGTACTACCAGAGGCGTCCAATGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG