1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtttgtatttaatacttcatgtcctttattcagtttgataattatgaagtttgtatttaatacgtcttgtcctttatgcagcttgagaaattatcttctgattttttttttatttttggctttactgtgcagTCGGAATATCCAGCTCTCCCTTAGTGTTCTCCTTTTTGGTGTTGGAGTTGCAACTGTGACTGACCTGCAGCTTAATGCTGTGGGATCTGTCCTGTCTTTG
species | Oryza sativa |
transcript | LOC_Os01g07310.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATCCCCTGCACTGTTATACTTGAGACTCTTTTCTTCAGGAAGAAGTTTAG TCGGAATATCCAGCTCTCCCTTAGTGTTCTCCTTTTTGGTGTTGGAGTTEST: gi|58689272|gb|CK077959.1|CK077959
genomic: ATCCCCTGCACTGTTATACTTGAGACTCTTTTCTTCAGGAAGAAGTTTAGgtttgtattt ... tactgtgcagTCGGAATATCCAGCTCTCCCTTAGTGTTCTCCTTTTTGGTGTTGGAGTT
EST: ATCCCCTGCACTGTTATACTTGAGACTCTTTTCTTCAGGAAGAAGTTTAG TCGGAATATCCAGCTCTCCCTTAGTGTTCTCCTEST: gi|29645955|gb|CB650962.1|CB650962
genomic: ATCCCCTGCACTGTTATACTTGAGACTCTTTTCTTCAGGAAGAAGTTTAGgtttgtattt ... tactgtgcagTCGGAATATCCAGCTCTCCCTTAGTGTTCTCCT
EST: ATCCCCTGCACTGTTATACTTGAGACTCTTTTCTTCAGGAAGAAGTTTAG TCGGAATATCCAGCTCTCCCTTAGTGTTCTCCTTTTTGGTGTTGGAGTTGCEST: gi|29646078|gb|CB651085.1|CB651085
genomic: ATCCCCTGCACTGTTATACTTGAGACTCTTTTCTTCAGGAAGAAGTTTAGgtttgtattt ... tactgtgcagTCGGAATATCCAGCTCTCCCTTAGTGTTCTCCTTTTTGGTGTTGGAGTTGC
EST: ATCCCCTGCACTGTTATACTTGAGACTCTTTTCTTCAGGAAGAAGTTTAG TCGGAATATCCAGCTCTCCCTTAGTGGTCTCCTTTTTGGAGTAGGAGTTGCEST: gi|58691484|gb|CK080171.1|CK080171
genomic: ATCCCCTGCACTGTTATACTTGAGACTCTTTTCTTCAGGAAGAAGTTTAGgtttgtattt ... tactgtgcagTCGGAATATCCAGCTCTCCCTTAGTGTTCTCCTTTTTGGTGTTGGAGTTGC
EST: ATCCCCTGCACTGTTATACTTGAGACTCTTTTCTTCAGGAAGAAGTTTAG TCGGAATATCCAGCTCTCCCTTAGTGTTCTCCTTTTTGGTGTTGGAGTTGCEST: gi|2796302|gb|AA749596.1|AA749596
genomic: ATCCCCTGCACTGTTATACTTGAGACTCTTTTCTTCAGGAAGAAGTTTAGgtttgtattt ... tactgtgcagTCGGAATATCCAGCTCTCCCTTAGTGTTCTCCTTTTTGGTGTTGGAGTTGC
EST: ATCCCCTGCACTGTTATACTTGAGACTCTTTTCTTCAGGAAGAAGTTTAG TCGGAATATCCAGCTCTCCCTTTCAGTGTTCTCCTTTEST: gi|58686479|gb|CK075166.1|CK075166
genomic: ATCCCCTGCACTGTTATACTTGAGACTCTTTTCTTCAGGAAGAAGTTTAGgtttgtattt ... tactgtgcagTCGGAATATCCAGCTCTCCCTT--AGTGTTCTCCTTT
EST: ATCCCCTGCACTGTTATACTTGAGACTCTTTTCTTCAGGAAGAAGTTTAG TCGGAATATCCAGCTCTCCCTTAGTEST: gi|29645083|gb|CB650090.1|CB650090
genomic: ATCCCCTGCACTGTTATACTTGAGACTCTTTTCTTCAGGAAGAAGTTTAGgtttgtattt ... tactgtgcagTCGGAATATCCAGCTCTCCCTTAGT
EST: ATCCCCTGCACTGTTATACTTGAGACTCTTTTCTTCAGGAAGAAGTTTAG TCGGAATATCCAGCTCTCCCTTAGTGTTCTCCTTTTTGGTGTTGGAGTTGCEST: gi|29663298|gb|CB659573.1|CB659573
genomic: ATCCCCTGCACTGTTATACTTGAGACTCTTTTCTTCAGGAAGAAGTTTAGgtttgtattt ... tactgtgcagTCGGAATATCCAGCTCTCCCTTAGTGTTCTCCTTTTTGGTGTTGGAGTTGC
EST: ATCCCCTGCACTGTTATACTTGAGACTCTTTTCTTCAGGAAGAAGTTTAG TCGGAATATCCAGCTCTCCCTTAGTGTTCTCCTTTTTGGTGTTGGAGTTGCEST: gi|29641313|gb|CB646320.1|CB646320
genomic: ATCCCCTGCACTGTTATACTTGAGACTCTTTTCTTCAGGAAGAAGTTTAGgtttgtattt ... tactgtgcagTCGGAATATCCAGCTCTCCCTTAGTGTTCTCCTTTTTGGTGTTGGAGTTGC
EST: ATCCCCTGCACTGTTATACTTGAGACTCTTTTCTTCAGGAAGAAGTTTAG TCGGAATATCCAGCTCTCCCTTAGTGTTCTCCTTTTTGGTGTTGGAGTTGCEST: gi|58687536|gb|CK076223.1|CK076223
genomic: ATCCCCTGCACTGTTATACTTGAGACTCTTTTCTTCAGGAAGAAGTTTAGgtttgtattt ... tactgtgcagTCGGAATATCCAGCTCTCCCTTAGTGTTCTCCTTTTTGGTGTTGGAGTTGC
EST: ATCCCCTGCACTGTTATACTTGAGACTCTTTTCTTCAGGAAGAAGTTTAG TCGGAATATCCAGCTCTCCCTTAGTGTTCTCCTTTTTGGTGTTGGAGTTGC
genomic: ATCCCCTGCACTGTTATACTTGAGACTCTTTTCTTCAGGAAGAAGTTTAGgtttgtattt ... tactgtgcagTCGGAATATCCAGCTCTCCCTTAGTGTTCTCCTTTTTGGTGTTGGAGTTGC
gcagcttgagaaattatcttctgattttttttttatttttggctttactgtgcagTCGGAATATCCAGCTCTCCCTTAGTGTTCTCCTTTTTGGTGTTGGAGTTGCAACTGTGACTGACCTGCAGCTTAATGCTGTGGGATCTGTCCTGTCTTTG
ttctgat putative branch site (score: 3)
ttttttttttattttt CT-rich tract
ttgagaaattatcttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtatttaatacttcatgtcctttattcagtttgataattatgaagtttgtatttaatacgtcttgtcctttatgcagcttgagaaattatcttctgattttttttttatttttggctttactgtgcagTCGGAATATCCAGCTCTCCCTTAGTGTTCTCCTTTTTGGTGTTGGAGTTGCAACTGTGACTGACCTGCAGCTTAATGCTGTGGGATCTGTCCTGTCTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG