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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacgctgtaagctctgcaattagtgagtgattttgttttgacatcagattgagaagggcatggctgttgttgttttcttaggatggactgcttcatatgggtattggtgctcagataaacaatgtttggattattggataggattaagtacgatatcgatgattctgaacttctgatgtttcatttgccagAATACTCAACCTTTACTAA

Basic information

species Oryza sativa
transcript LOC_Os01g06540.1
intron # 4
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gataggattaagtacgatatcgatgattctgaacttctgatgtttcatttgccagAATACTCAACCTTTACTAA
                                  ttctgat  putative branch site (score: 3)
                                          tttcattt  CT-rich tract
      attaagta  TA-rich tract