1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...attgtttgttatatatttgaataatgaattcttggtatgagaaactttgtggtgaactggtggtgacctttcaagttgtattgtgccatacggataatagGCGCCAGAAAGAAGAGGCTCTTAACTTCCGTGCTAAAAAGGAGAATGAAGTGAGTGCAGTTGAAAAG
species | Oryza sativa |
transcript | LOC_Os01g06270.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCCCTCTCTAATTCATCTTCCAAGGCTGAGAAGCGTATTTTGGATCACAG GCGCCAGAAAGAAGAGGCTCTTAACTTCCGTGCTAAAAAGGAGAATGAAGT
genomic: TCCCTCTCTAATTCATCTTCCAAGGCTGAGAAGCGTATTTTGGATCACAGgtatagctat ... cggataatagGCGCCAGAAAGAAGAGGCTCTTAACTTCCGTGCTAAAAAGGAGAATGAAGT
tttgtggtgaactggtggtgacctttcaagttgtattgtgccatacggataatagGCGCCAGAAAGAAGAGGCTCTTAACTTCCGTGCTAAAAAGGAGAATGAAGTGAGTGCAGTTGAAAAG
ataata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgtttgttatatatttgaataatgaattcttggtatgagaaactttgtggtgaactggtggtgacctttcaagttgtattgtgccatacggataatagGCGCCAGAAAGAAGAGGCTCTTAACTTCCGTGCTAAAAAGGAGAATGAAGTGAGTGCAGTTGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- tgtttgt
- - - - - - - - - - - - - -attcttg
- - - - - - - - - - - - - - - - - - atgagaaa
- - - - - - - - - - - - - - - - - - - - - - - -tgtggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ctggtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgccata