1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaactaactaatttctctgatggaattgaccaaactttattgttttgttagctgatttagagtagctgagaattgagtagtgcgttgttaatttttgaaaatattgcagATGAGGAGGACGAGAAGGACGATCTGATATCGGCGGTGCAGTTCTTGTACATACTGGAGGAGTCGATCAGAACGTTCATGGCGTTCCTGCGTGCAGACAA
species | Oryza sativa |
transcript | LOC_Os01g03870.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCGGATGAAGAACTCATCCCCCGAGCTTCTCCTCGTCCCAGAGTTCAGAG ATGAGGAGGACGAGAAGGACGATCTGATGTCGGCGGTGCAGTTCTTGTACAEST: gi|58611656|gb|CK039368.1|CK039368
genomic: CCGGATGAAGAACTCATCCCCCAAGCTTCTCCTCGTCCCAGAGTTCAGAGgtaactaact ... aatattgcagATGAGGAGGACGAGAAGGACGATCTGATATCGGCGGTGCAGTTCTTGTACA
EST: CCGGATGAAGAACTCATCCCCCGAGCTTCTCCTCGTCCCAGAGTTCAGAG ATGAGGAGGACGAGAAGGACGATCTGGTATCGGCGGTGCAGTTCTTGTACAEST: gi|88221281|gb|CI221237.1|CI221237
genomic: CCGGATGAAGAACTCATCCCCCAAGCTTCTCCTCGTCCCAGAGTTCAGAGgtaactaact ... aatattgcagATGAGGAGGACGAGAAGGACGATCTGATATCGGCGGTGCAGTTCTTGTACA
EST: CCGGATGAAGAACTCATCCCCCAAGCTTCTCCTCGTCCCAGAGTTCAGAG ATGAGGAGGACGAGAAGGACGATCTGATATCGGCGGTGCAGTTCTTGTACA
genomic: CCGGATGAAGAACTCATCCCCCAAGCTTCTCCTCGTCCCAGAGTTCAGAGgtaactaact ... aatattgcagATGAGGAGGACGAGAAGGACGATCTGATATCGGCGGTGCAGTTCTTGTACA
atttagagtagctgagaattgagtagtgcgttgttaatttttgaaaatattgcagATGAGGAGGACGAGAAGGACGATCTGATATCGGCGGTGCAGTTCTTGTACATACTGGAGGAGTCGATCAGAACGTTCATGGCGTTCCTGCGTGCAGACAA
tgttaat putative branch site (score: 3)
ttgttaatttttgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactaactaatttctctgatggaattgaccaaactttattgttttgttagctgatttagagtagctgagaattgagtagtgcgttgttaatttttgaaaatattgcagATGAGGAGGACGAGAAGGACGATCTGATATCGGCGGTGCAGTTCTTGTACATACTGGAGGAGTCGATCAGAACGTTCATGGCGTTCCTGCGTGCAGACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG