1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ggagcaccaaagctaataggcagtgtaattattagtgatcagttgaatgacttgtgcgactgtttatagaactgatggaattctgggtgctcccatacagGATTGAGAAAAATGAAGAGTGGGTGATGGTGGTTGGATTCTTACTGTTGTGGTTAATACAATGCTCTTTGCGCCCATGGCACCTCACTAACTATTTAATA
species | Oryza sativa |
transcript | LOC_Os01g03160.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCTTCCAGAGCGAACATTTTTGCACCTGGGTTACAAGCACACGTCCAAAG GATTGAGAAAAATGAAGAGTGGGTGATGGTGGTTGGATTCTTACTGTTGTG
genomic: GCTTCCAGAGCGAACATTTTTGCACCTGGGTTACAAGCACACGTCCAAAGgtgagatggg ... tcccatacagGATTGAGAAAAATGAAGAGTGGGTGATGGTGGTTGGATTCTTACTGTTGTG
aatgacttgtgcgactgtttatagaactgatggaattctgggtgctcccatacagGATTGAGAAAAATGAAGAGTGGGTGATGGTGGTTGGATTCTTACTGTTGTGGTTAATACAATGCTCTTTGCGCCCATGGCACCTCACTAACTATTTAATA
aactgat putative branch site (score: 3)
tgctccc putative PPT
tttatagaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggagcaccaaagctaataggcagtgtaattattagtgatcagttgaatgacttgtgcgactgtttatagaactgatggaattctgggtgctcccatacagGATTGAGAAAAATGAAGAGTGGGTGATGGTGGTTGGATTCTTACTGTTGTGGTTAATACAATGCTCTTTGCGCCCATGGCACCTCACTAACTATTTAATA
- - caccaaa
- - - - - - - - - - - - - - - - - - - - - ttgaatg
- - - - - - - - - - - - - - - - - - - - - - - - - cttgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgggtg