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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttcggtatcttagtttaattttgcccataaataatcgttttttaagtaaatacttggtaccgttgttaagactttttttctaccatgtcattggccttgcagTGGTTTTCGTGAAGAACCATTCTCCACTACTGCACATGTCAAAAATCGGATTGCGGACATTGTTTTTATGGACTTGATCTTTTGGGCATGCATAATTGGC

Basic information

species Oryza sativa
transcript LOC_Os01g02320.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58685791|gb|CK074478.1|CK074478
EST:     CATCCGACTGCATTTGAGCTAATCAAGCAGTGCCTAAACCGGTCAATTCG                         TGGTTTTCGTGAAGAACCATTCTCCACTACTGCACATGTCAAAAATCGGAT
genomic: CATCCGACTGCATTTGAGCTAATCAAGCAGTGCCTAAACCGGTCAATTCGgtgagtttcg ... ggccttgcagTGGTTTTCGTGAAGAACCATTCTCCACTACTGCACATGTCAAAAATCGGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatacttggtaccgttgttaagactttttttctaccatgtcattggccttgcagTGGTTTTCGTGAAGAACCATTCTCCACTACTGCACATGTCAAAAATCGGATTGCGGACATTGTTTTTATGGACTTGATCTTTTGGGCATGCATAATTGGC
                  ttaagacttttttt  TA-rich tract