1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgctctattatttttcataatatttgtgacacataaccatggcagtatttagcttattttttctttgtttgttcacaattgacctcattccatgccacagTCGGACCTTGGGAGATGCTCCTTCAGCAATCACTTACTATGAAGAAAGTGCTGAATTCCTCTCGAAATTGCCCAAAAAAGATCTGGAG
species | Oryza sativa |
transcript | LOC_Os01g01420.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAACTTGGAGCTGTGTTAGGAATGCTTGGGGACTGCTG TCGGACCTTGGGAGATGCTCCTTCAGCAATCACTTACTATGAAGAAAGTGCEST: gi|218483541|gb|FG956377.1|FG956377
genomic: CAACTTGGAGCTGTGTTAGGAATGCTTGGGGACTGCTGgtacgacaat ... catgccacagTCGGACCTTGGGAGATGCTCCTTCAGCAATCACTTACTATGAAGAAAGTGC
EST: GAACTGTGTTCTCAACTTGGAGCTGTGTTAGGAATGCTTGGGGACTGCTG TCGGACCTTGGGAGATGCTCCTTCAGCAATCACTTACTATGAAGAAAGTGCEST: gi|163927593|gb|EG709977.1|EG709977
genomic: GAACTGTGTTCTCAACTTGGAGCTGTGTTAGGAATGCTTGGGGACTGCTGgtacgacaat ... catgccacagTCGGACCTTGGGAGATGCTCCTTCAGCAATCACTTACTATGAAGAAAGTGC
EST: GAACTGTGTTCTCAACTTGGAGCTGTGTTAGGAATGCTTGGGGACTGCTG TCGGACCTTGGGAGATGCTCCTTCAGCAATCACTTACTATGAAGAAAGTGC
genomic: GAACTGTGTTCTCAACTTGGAGCTGTGTTAGGAATGCTTGGGGACTGCTGgtacgacaat ... catgccacagTCGGACCTTGGGAGATGCTCCTTCAGCAATCACTTACTATGAAGAAAGTGC
tatttagcttattttttctttgtttgttcacaattgacctcattccatgccacagTCGGACCTTGGGAGATGCTCCTTCAGCAATCACTTACTATGAAGAAAGTGCTGAATTCCTCTCGAAATTGCCCAAAAAAGATCTGGAG
aattgac putative branch site (score: 3)
cctcattcc CT-rich tract
ttattttttctttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgctctattatttttcataatatttgtgacacataaccatggcagtatttagcttattttttctttgtttgttcacaattgacctcattccatgccacagTCGGACCTTGGGAGATGCTCCTTCAGCAATCACTTACTATGAAGAAAGTGCTGAATTCCTCTCGAAATTGCCCAAAAAAGATCTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - -cacataa
- - - - - - - - - - - - - - - - - - ccatggc