1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tttaagtgcggttatcaaccgcccttgaaattgcttgttggactatcttgagtattatcatcttttttcgcgtaaaacgaatgccctgatccacctgtagAATATGCAAGATGAAATGACTGACCTGATGGATGTGAGCAACGAAATACAAGAATCCCTTGGTAGAAGCTACAACATCCCTGACGATGTTGATGAGGAAG
species | Oryza sativa |
transcript | LOC_Os01g01350.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATAAAGAGCTCAAGGGAATGATGAAGACAGTCAAGATTGAGGACATCGAT AATATGCAAGATGAAATGACTGACCTGATGGATGTGAGCAACGAAATACAAEST: gi|163926062|gb|EG715018.1|EG715018
genomic: ATAAAGAGCTCAAGGGAATGATGAAGACAGTCAAGATTGAGGACATCGATgtatgcttct ... ccacctgtagAATATGCAAGATGAAATGACTGACCTGATGGATGTGAGCAACGAAATACAA
EST: ATAAAGAGCTCAAGGGAATGATGAAAACAGTCAAGATTGAGGACATCGAT AATATGCAAGATGAAATGACTGACCTGATGGATGTGAGCAACGAAATACAAEST: gi|33803103|gb|CF327422.1|CF327422
genomic: ATAAAGAGCTCAAGGGAATGATGAAGACAGTCAAGATTGAGGACATCGATgtatgcttct ... ccacctgtagAATATGCAAGATGAAATGACTGACCTGATGGATGTGAGCAACGAAATACAA
EST: ATAAAGAGCTCAAGGGAATGATGAAGACAGTCAAGTTTGAGGACATCGAT AATATGCAAGATGAAATGACTGACCTGATGGATGTGAGCAACGAAATACAA
genomic: ATAAAGAGCTCAAGGGAATGATGAAGACAGTCAAGATTGAGGACATCGATgtatgcttct ... ccacctgtagAATATGCAAGATGAAATGACTGACCTGATGGATGTGAGCAACGAAATACAA
tcttgagtattatcatcttttttcgcgtaaaacgaatgccctgatccacctgtagAATATGCAAGATGAAATGACTGACCTGATGGATGTGAGCAACGAAATACAAGAATCCCTTGGTAGAAGCTACAACATCCCTGACGATGTTGATGAGGAAG
ccctgat putative branch site (score: 3)
tccacct CT-rich tract
tattatcatctttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttaagtgcggttatcaaccgcccttgaaattgcttgttggactatcttgagtattatcatcttttttcgcgtaaaacgaatgccctgatccacctgtagAATATGCAAGATGAAATGACTGACCTGATGGATGTGAGCAACGAAATACAAGAATCCCTTGGTAGAAGCTACAACATCCCTGACGATGTTGATGAGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - -cttgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgccc