1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tagagtgaagctgtgtaggaaaactcttgctcattttctgtactcctttttatgtggtatccaaccatgtgacgaacacatgttcaacatcactatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCGAGCACCAATAAGTCACTAAAACCTGCAGTAAGAGCCAACGGCATAGATGTGGCTACTTTCTCAACTCC
species | Oryza sativa |
transcript | 13113.m00235 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGGAATATTTTTCTGTCAGATTTGGCACGTACGAAGAGTCTCTAATAACA CTTTTCAGCCTAATGGGCAGGCTCCAATTTCGAGCACCAATAAGTCACTAAEST: gi|319908506|gb|HS977634.1|HS977634
genomic: AGGAATATTTTTCTGTCAGATTTGGCACGTAGGAAGAGTCTCTAATAACAgtatgtttac ... cactatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCGAGCACCAATAAGTCACTAA
EST: AGGAATATTTTTCTGTCAGATTTGGCACGTAGGAAGAGTCTCTAATAACA CTTTTCAGCCTANTGGGCAGGCTCCAATTTCGAGCACCAATAAGTCACTAAEST: gi|58694336|gb|CK083023.1|CK083023
genomic: AGGAATATTTTTCTGTCAGATTTGGCACGTAGGAAGAGTCTCTAATAACAgtatgtttac ... cactatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCGAGCACCAATAAGTCACTAA
EST: GGAATATTTTTCTTGTCAGATTTGGCACGTAGGAAGAGTCTCTAATAACA CTTTTCAGCCTAATGGGCAGGCTCCAATTTCGAGCACCAATAAGTCACTAAEST: gi|29621672|gb|CB626683.1|CB626683
genomic: GGAATATTTTTC-TGTCAGATTTGGCACGTAGGAAGAGTCTCTAATAACAgtatgtttac ... cactatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCGAGCACCAATAAGTCACTAA
EST: AGGAATATTTTTCTGTCAGATTTGGCACGTAGGAAGAGTCTCTAATAACA CTTTTCAGCCTAATGGGCAGGCTCCAATTTCGAGCACCAATAAGTCACTAAEST: gi|29683991|gb|CB680266.1|CB680266
genomic: AGGAATATTTTTCTGTCAGATTTGGCACGTAGGAAGAGTCTCTAATAACAgtatgtttac ... cactatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCGAGCACCAATAAGTCACTAA
EST: AGGAATATTTTTCTGTCAGATTTGGCACGTAGGAAGAGTCTCTAATAACA CTTTTCAGCCTAATGGGCAGGCTCCAATTTCGAGCACCAATAAGTCACTAAEST: gi|29685578|gb|CB681853.1|CB681853
genomic: AGGAATATTTTTCTGTCAGATTTGGCACGTAGGAAGAGTCTCTAATAACAgtatgtttac ... cactatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCGAGCACCAATAAGTCACTAA
EST: AGGAATATTTTTCTGTCAGATTTGGCACGTAGGAAGAGTCTCTAATAACA CTTTTCAGCCTAATGGGCAGGCTCCAATTTCGAGCACCAATAAGTCACTAAEST: gi|29669631|gb|CB665906.1|CB665906
genomic: AGGAATATTTTTCTGTCAGATTTGGCACGTAGGAAGAGTCTCTAATAACAgtatgtttac ... cactatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCGAGCACCAATAAGTCACTAA
EST: AGGAATATTTTTCTGTCAGATTTGGCACGTAGGAAGAGTCTCTAATAACA CTTTTCAGCCTAATGGGCAGGCTCCAATTTCGAGCACCAATAAGTCACTAAEST: gi|29621017|gb|CB626028.1|CB626028
genomic: AGGAATATTTTTCTGTCAGATTTGGCACGTAGGAAGAGTCTCTAATAACAgtatgtttac ... cactatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCGAGCACCAATAAGTCACTAA
EST: AGGAATATTTTTCTGTCAGATTTGGCACGTACGAAGAGTCTCTAATAACA CTTTTCAGCCTAATGGGCAGGCTCCAATTTCGAGCACCAATAAGTCACTAA
genomic: AGGAATATTTTTCTGTCAGATTTGGCACGTAGGAAGAGTCTCTAATAACAgtatgtttac ... cactatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCGAGCACCAATAAGTCACTAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagagtgaagctgtgtaggaaaactcttgctcattttctgtactcctttttatgtggtatccaaccatgtgacgaacacatgttcaacatcactatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCGAGCACCAATAAGTCACTAAAACCTGCAGTAAGAGCCAACGGCATAGATGTGGCTACTTTCTCAACTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - gaagctg
- - - - - - - - aggaaaa
- - - - - - - - - - - - -cttgctc
- - - - - - - - - - - - - - - - -ttttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgttc